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The expansion of deleted mitochondrial DNA (mtDNA) molecules has been linked to ageing, particularly in skeletal muscle fibres; its mechanism has remained unclear for three decades. Previous accounts assigned a replicative advantage to the…

Populations and Evolution · Quantitative Biology 2020-09-02 Ferdinando Insalata , Hanne Hoitzing , Juvid Aryaman , Nick S. Jones

Generative models have been widely studied in computer vision. Recently, diffusion models have drawn substantial attention due to the high quality of their generated images. A key desired property of image generative models is the ability…

Computer Vision and Pattern Recognition · Computer Science 2022-12-20 Qiucheng Wu , Yujian Liu , Handong Zhao , Ajinkya Kale , Trung Bui , Tong Yu , Zhe Lin , Yang Zhang , Shiyu Chang

Fitness consequence of dispersal depends on property of the entire landscape, which patches are available and what are the cost of moving. These are information that are not available locally when an organism make the decision to disperse.…

Populations and Evolution · Quantitative Biology 2026-01-08 Wayne Liang , Rufus Johnstone

The emerging field of high-throughput compartmentalized in vitro evolution is a promising new approach to protein engineering. In these experiments, libraries of mutant genotypes are randomly distributed and expressed in microscopic…

Populations and Evolution · Quantitative Biology 2019-11-06 Anton S. Zadorin , Yannick Rondelez

Next-generation sequencing technologies now constitute a method of choice to measure gene expression. Data to analyze are read counts, commonly modeled using Negative Binomial distributions. A relevant issue associated with this…

Methodology · Statistics 2014-11-10 Elisabetta Bonafede , Franck Picard , Stéphane Robin , Cinzia Viroli

Mitochondrial DNA (mtDNA) mutations cause severe congenital diseases but may also be associated with healthy aging. MtDNA is stochastically replicated and degraded, and exists within organelles which undergo dynamic fusion and fission. The…

Subcellular Processes · Quantitative Biology 2019-07-04 Juvid Aryaman , Charlotte Bowles , Nick S. Jones , Iain G. Johnston

Existing attribute editing methods treat semantic attributes as binary, resulting in a single edit per attribute. However, attributes such as eyeglasses, smiles, or hairstyles exhibit a vast range of diversity. In this work, we formulate…

Computer Vision and Pattern Recognition · Computer Science 2023-11-28 Rishubh Parihar , Prasanna Balaji , Raghav Magazine , Sarthak Vora , Tejan Karmali , Varun Jampani , R. Venkatesh Babu

The fusion of multispectral and panchromatic images is always dubbed pansharpening. Most of the available deep learning-based pan-sharpening methods sharpen the multispectral images through a one-step scheme, which strongly depends on the…

Image and Video Processing · Electrical Eng. & Systems 2022-08-01 Yinghui Xing , Shuyuan Yang , Song Wang , Yan Zhang , Yanning Zhang

Mixed dispersal syndromes have historically been regarded as bet-hedging mechanisms that enhance survival in unpredictable environments, ensuring that some propagules stay in the maternal environment while others can potentially colonize…

Populations and Evolution · Quantitative Biology 2015-11-12 Jorge Hidalgo , Rafael Rubio de Casas , Miguel A. Munoz

Manifold learning techniques have become increasingly valuable as data continues to grow in size. By discovering a lower-dimensional representation (embedding) of the structure of a dataset, manifold learning algorithms can substantially…

Neural and Evolutionary Computing · Computer Science 2020-01-31 Andrew Lensen , Mengjie Zhang , Bing Xue

Generative models have enjoyed widespread success in a variety of applications. However, they encounter inherent mathematical limitations in modeling distributions where samples are constrained by equalities, as is frequently the setting in…

Machine Learning · Computer Science 2026-02-02 Katherine Keegan , Lars Ruthotto

Large-scale text-to-image models have demonstrated amazing ability to synthesize diverse and high-fidelity images. However, these models are often violated by several limitations. Firstly, they require the user to provide precise and…

Computer Vision and Pattern Recognition · Computer Science 2023-05-09 Yupei Lin , Sen Zhang , Xiaojun Yang , Xiao Wang , Yukai Shi

Controllable image generation is fundamental to the success of modern generative AI, yet it faces a critical trade-off between semantic fidelity and inference speed. The RemEdit diffusion-based framework addresses this trade-off with two…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Eashan Adhikarla , Brian D. Davison

Dataset expansion can effectively alleviate the problem of data scarcity for medical image segmentation, due to privacy concerns and labeling difficulties. However, existing expansion algorithms still face great challenges due to their…

Image and Video Processing · Electrical Eng. & Systems 2023-06-07 Shitong Shao , Xiaohan Yuan , Zhen Huang , Ziming Qiu , Shuai Wang , Kevin Zhou

Several computer vision and artificial intelligence projects are nowadays exploiting the manifold data distribution using, e.g., the diffusion process. This approach has produced dramatic improvements on the final performance thanks to the…

Computer Vision and Pattern Recognition · Computer Science 2019-08-20 Federico Magliani , Laura Sani , Stefano Cagnoni , Andrea Prati

During embryonic development, differentiating cells respond via gene expression to positional cues from morphogen gradients. While gene expression is often highly erratic, embryonic development is precise. We show by theory and simulations…

Cell Behavior · Quantitative Biology 2015-05-13 Thorsten Erdmann , Martin Howard , Pieter Rein ten Wolde

When a biological population expands into new territory, genetic drift develops an enormous influence on evolution at the propagating front. In such range expansion processes, fluctuations in allele frequencies occur through stochastic…

Biological Physics · Physics 2018-12-24 Sherry Chu , Mehran Kardar , David R. Nelson , Daniel A. Beller

Background: Duplication of genes is important for evolution of molecular networks. Many authors have therefore considered gene duplication as a driving force in shaping the topology of molecular networks. In particular it has been noted…

Populations and Evolution · Quantitative Biology 2009-11-13 Jakob Enemark , Kim Sneppen

Range expansion and range shifts are crucial population responses to climate change. Genetic consequences are not well understood but are clearly coupled to ecological dynamics that, in turn, are driven by shifting climate conditions. We…

Populations and Evolution · Quantitative Biology 2016-09-29 Jimmy Garnier , Mark Lewis

Theory predicts rapid genetic drift during invasions, yet many expanding populations maintain high genetic diversity. We find that genetic drift is dramatically suppressed when dispersal rates increase with the population density because…

Populations and Evolution · Quantitative Biology 2019-03-29 Gabriel Birzu , Sakib Matin , Oskar Hallatschek , Kirill S. Korolev
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