Related papers: Group testing algorithms: bounds and simulations
We consider the probabilistic group testing problem where $d$ random defective items in a large population of $N$ items are identified with high probability by applying binary tests. It is known that $\Theta(d \log N)$ tests are necessary…
Choosing an optimal strategy for hierarchical group testing is an important problem for practitioners who are interested in disease screening with limited resources. For example, when screening for infectious diseases in large populations,…
In Group Testing, the objective is to identify $K$ defective items out of $N$, $K\ll N$, by testing pools of items together and using the least amount of tests possible. Recently, a fast decoding method based on binary splitting (Price and…
We construct optimal designs for group testing experiments where the goal is to estimate the prevalence of a trait by using a test with uncertain sensitivity and specificity. Using optimal design theory for approximate designs, we show that…
We investigate distribution testing with access to non-adaptive conditional samples. In the conditional sampling model, the algorithm is given the following access to a distribution: it submits a query set $S$ to an oracle, which returns a…
We formulate and analyze a stochastic threshold group testing problem motivated by biological applications. Here a set of $n$ items contains a subset of $d \ll n$ defective items. Subsets (pools) of the $n$ items are tested -- the test…
In this paper, we propose a computer-oriented method of construction of optimal group sequential hypothesis tests with variable group sizes. In particular, for independent and identically distributed observations we obtain the form of…
Group testing is the process of pooling arbitrary subsets from a set of $n$ items so as to identify, with a minimal number of tests, a "small" subset of $d$ defective items. In "classical" non-adaptive group testing, it is known that when…
In group testing, simple binary-output tests are designed to identify a small number $t$ of defective items that are present in a large population of $N$ items. Each test takes as input a group of items and produces a binary output…
Union-free codes and disjunctive codes are two combinatorial structures, which are used in nonadaptive group testing to find a set of $d$ defective elements among $n$ samples by carrying out the minimal number of tests $t$. It is known that…
We study the problem of identifying a small set $k\sim n^\theta$, $0<\theta<1$, of infected individuals within a large population of size $n$ by testing groups of individuals simultaneously. All tests are conducted concurrently. The goal is…
In the problem of classical group testing one aims to identify a small subset (of size $d$) diseased individuals/defective items in a large population (of size $n$). This process is based on a minimal number of suitably-designed group tests…
In probabilistic nonadaptive group testing (PGT), we aim to characterize the number of pooled tests necessary to identify a random $k$-sparse vector of defectives with high probability. Recent work has shown that $n$ tests are necessary…
The goal of threshold group testing is to identify up to $d$ defective items among a population of $n$ items, where $d$ is usually much smaller than $n$. A test is positive if it has at least $u$ defective items and negative otherwise. Our…
Group testing is the combinatorial problem of identifying the defective items in a population by grouping items into test pools. Recently, nonadaptive group testing - where all the test pools must be decided on at the start - has been…
Given $p$ samples, each of which may or may not be defective, group testing (GT) aims to determine their defect status by performing tests on $n < p$ `groups', where a group is formed by mixing a subset of the $p$ samples. Assuming that the…
For large classes of group testing problems, we derive lower bounds for the probability that all significant items are uniquely identified using specially constructed random designs. These bounds allow us to optimize parameters of the…
In this paper, we provide an efficient algorithm to construct almost optimal $(k,n,d)$-superimposed codes with runlength constraints. A $(k,n,d)$-superimposed code of length $t$ is a $t \times n$ binary matrix such that any two 1's in each…
We consider the problem of hypothesis testing for discrete distributions. In the standard model, where we have sample access to an underlying distribution $p$, extensive research has established optimal bounds for uniformity testing,…
We give new sublinear and parallel algorithms for the extensively studied problem of approximating n-variable r-CSPs (constraint satisfaction problems with constraints of arity r up to an additive error. The running time of our algorithms…