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In order to study long chain polymers many lattice models accommodate a pulling force applied to a particular part of the chain, often a free endpoint. This is in addition to well-studied features such as energetic interaction between the…

Statistical Mechanics · Physics 2023-07-19 C. J. Bradly , A. L. Owczarek

Motivated by identifying the origin of the bias dependence of tension propagation we investigate methods for measuring tension propagation quantitatively in computer simulations of driven polymer translocation. Here the motion of flexible…

Biological Physics · Physics 2017-12-18 P. M. Suhonen , J. Piili , R. P. Linna

The scaling behavior of the closed trajectories of a moving particle generated by randomly placed rotators or mirrors on a square or triangular lattice in the critical region are investigated. We study numerically two scaling functions:…

Condensed Matter · Physics 2007-05-23 Meng-she Cao , E. G. D. Cohen

We study numerically the tightness of prime flat knots in a model of self-attracting polymers with excluded volume. We find that these knots are localised in the high temperature swollen regime, but become delocalised in the low temperature…

Soft Condensed Matter · Physics 2009-11-07 E. Orlandini , A. L. Stella , C. Vanderzande

The aim of this paper is to investigate the distribution of a continuous polymer in the presence of an attractive finitely supported potential. The most intricate behavior can be observed if we simultaneously and independently vary two…

Mathematical Physics · Physics 2020-12-04 L. Koralov , S. Molchanov , B. Vainberg

In earlier work we provided the first evidence that the collapse, or coil-globule, transition of an isolated polymer in solution can be seen in a four-dimensional model. Here we investigate, via Monte Carlo simulations, the canonical…

Statistical Mechanics · Physics 2009-10-31 T. Prellberg , A. L. Owczarek

Polymer chains with hard-core interaction on a two-dimensional lattice are modeled by directed random walks. Two models, one with intersecting walks (IW) and another with non-intersecting walks (NIW) are presented, solved and compared. The…

Condensed Matter · Physics 2016-08-31 G. Forgacs , K. Ziegler

We determine the scaling exponents of polymer translocation (PT) through a nanopore by extensive computer simulations of various microscopic models for chain lengths extending up to N=800 in some cases. We focus on the scaling of the…

We study the configurational properties of single polymers in a theta solvent by Monte Carlo simulation of the bond fluctuation model. The intramolecular structure factor at the theta point is found to be distinctively different from that…

Soft Condensed Matter · Physics 2015-05-14 Kenji Shimomura , Hiizu Nakanishi , Namiko Mitarai

Wetting and drying phenomena are studied for flexible and semiflexible polymer solutions via coarse-grained molecular dynamics simulations and density functional theory calculations. The study is based on the use of Young's equation for the…

Soft Condensed Matter · Physics 2022-02-16 Jiarul Midya , Sergei A. Egorov , Kurt Binder , Arash Nikoubashman

We present the exact solutions of various directed walk models of polymers confined to a slit and interacting with the walls of the slit via an attractive potential. We consider three geometric constraints on the ends of the polymer and…

Statistical Mechanics · Physics 2009-11-11 R Brak , A L Owczarek , A Rechnitzer , S G Whittington

In this paper we develop a Bethe approximation, based on the cluster variation method, which is apt to study lattice models of branched polymers. We show that the method is extremely accurate in cases where exact results are known as, for…

Statistical Mechanics · Physics 2007-05-23 Paolo De Los Rios , Stefano Lise , Alessandro Pelizzola

We find and analyse the exact solution of a model of three different polymers with asymmetric contact interactions in two dimensions, modelling a scenario where there are different types of polymers involved. In particular, we find the…

Statistical Mechanics · Physics 2025-09-15 Aleksander L Owczarek , Andrew Rechnitzer

We study heat conduction in a one-dimensional chain of particles with longitudinal as well as transverse motions. The particles are connected by two-dimensional harmonic springs together with bending angle interactions. Using equilibrium…

Statistical Mechanics · Physics 2009-11-10 Jian-Sheng Wang , Baowen Li

We perform a Monte Carlo simulation of two-dimensional N-step interacting self-avoiding walks at the theta point, with lengths up to N=3200. We compute the critical exponents, verifying the Coulomb-gas predictions, the theta-point…

Soft Condensed Matter · Physics 2015-03-17 Sergio Caracciolo , Marco Gherardi , Mauro Papinutto , Andrea Pelissetto

The conformational states of a semiflexible polymer enclosed in a compact domain of typical size $a$ are studied as stochastic realizations of paths defined by the Frenet equations under the assumption that stochastic "curvature" satisfies…

Soft Condensed Matter · Physics 2019-07-17 Pavel Castro-Villarreal , J. E. Ramírez

We consider two complementary polymer strands of length $L$ attached by a common end monomer. The two strands bind through complementary monomers and at low temperatures form a double stranded conformation (zipping), while at high…

Statistical Mechanics · Physics 2015-03-19 Jean-Charles Walter , Alessandro Ferrantini , Enrico Carlon , Carlo Vanderzande

We present a Brownian dynamics model of driven polymer translocation, in which non-equilibrium memory effects arising from tension propagation (TP) along the cis side subchain are incorporated as a time-dependent friction. To solve the…

Soft Condensed Matter · Physics 2015-06-03 Timo Ikonen , Aniket Bhattacharya , Tapio Ala-Nissila , Wokyung Sung

We study the thermodynamics of an exactly solvable model of a self-interacting partially directed self-avoiding walk (DSAW) in two dimensions, when a force is applied on one end of the chain. The critical force for the unfolding is…

Statistical Mechanics · Physics 2009-11-10 A. Rosa , D. Marenduzzo , A. Maritan , F. Seno

A polymer folding model on the square lattice is constructed with attractive contact interactions of strength 1/c^2, 0<c<1. The corresponding model on a dynamical random lattice, with freely fluctuating co-ordination number at each vertex,…

Condensed Matter · Physics 2016-08-31 S. Dalley