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Real-life bacteria often swim in complex fluids, but our understanding of the interactions between bacteria and complex surroundings is still evolving. In this work, rod-like \textit{Bacillus subtilis} swims in a quasi-2D environment with…

The cause-specific cumulative incidence function (CIF) quantifies the subject-specific disease risk with competing risk outcome. With longitudinally collected biomarker data, it is of interest to dynamically update the predicted CIF by…

Quantitative Methods · Quantitative Biology 2019-06-14 Cai Wu , Liang Li , Ruosha Li

Understanding dynamics of an infectious disease helps in designing appropriate strategies for containing its spread in a population. Recent mathematical models are aimed at studying dynamics of some specific types of infectious diseases. In…

Dynamical Systems · Mathematics 2015-02-05 P. Raja Sekhara Rao , M. Naresh Kumar

Sepsis is an organ dysfunction caused by a deregulated immune response to an infection. Early sepsis prediction and identification allow for timely intervention, leading to improved clinical outcomes. Clinical calculators (e.g., the…

Machine Learning · Computer Science 2025-01-13 Changchang Yin , Shihan Fu , Bingsheng Yao , Thai-Hoang Pham , Weidan Cao , Dakuo Wang , Jeffrey Caterino , Ping Zhang

A major contribution to the onset and development of autoimmune disease is known to come from infections. An important practical problem is identifying the precise mechanism by which the breakdown of immune tolerance as a result of immune…

Quantitative Methods · Quantitative Biology 2018-05-21 F. Fatehi Chenar , Y. N. Kyrychko , K. B. Blyuss

We explore the role of cellular life cycles for viruses and host cells in an infection process. For this purpose, we derive a generalized version of the basic model of virus dynamics (Nowak, M.A., Bangham, C.R.M., 1996. Population dynamics…

Populations and Evolution · Quantitative Biology 2008-04-28 Daniel Campos , Vicenç Méndez , Sergei Fedotov

Hepatitis B virus (HBV) is considered as etiological agent of the lethal liver disease hepatitis B. Globally, hepatitis B is recognized as one of the prevailing infectious diseases with a significant impact on human health. In spite of…

Quantitative Methods · Quantitative Biology 2024-11-19 Rupchand Sutradhar , Gopinath Sadhu , D C Dalal

Leprosy (Hansen's disease) is an infectious, neglected tropical disease caused by the Mycobacterium Leprae (M. Leprae). Each year there are approximately 2,02,189 new cases are detected globally. In the year 2017 more than half million…

Dynamical Systems · Mathematics 2022-08-04 Dinesh Nayak , Bishal Chhetri , D. K. K. Vamsi , Swapna Muthusamy , Vijay M. Bhagat

We theoretically study the static and dynamic behavior of a BEC immersed in a large Fermi sea of ultracold atoms under conditions of tunable interspecies interaction. The degenerate Bose-Fermi mixture is kept in an elongated trap, typical…

Quantum Gases · Physics 2020-06-22 Bo Huang

Along the pathogenesis of Mycobacterium Tuberculosis (MTB), hypoxia-induced dormancy is a process involving the oxygen-depleted environment encountered inside the lung granuloma, where bacilli enter a viable, non-replicating state termed as…

Genomics · Quantitative Biology 2023-11-07 Rohak Jain

In this work we present a novel publicly available stereo based 3D RGB dataset for multi-object zebrafish tracking, called 3D-ZeF. Zebrafish is an increasingly popular model organism used for studying neurological disorders, drug addiction,…

Computer Vision and Pattern Recognition · Computer Science 2020-06-16 Malte Pedersen , Joakim Bruslund Haurum , Stefan Hein Bengtson , Thomas B. Moeslund

Microbial dormancy is an evolutionary trait that has emerged independently at various positions across the tree of life. It describes the ability of a microorganism to switch to a metabolically inactive state that can withstand unfavorable…

Probability · Mathematics 2020-04-08 Jochen Blath , András Tóbiás

The emerging field of immunometabolism has underscored the central role of metabolic pathways in orchestrating immune cell function. Far from being passive background processes, metabolic activities actively regulate key immune responses.…

Cell Behavior · Quantitative Biology 2025-06-04 Sunayana Malla , Nabia Shahreen , Rajib Saha

We show that a certain model for the spread of an infection has a phase transition in the recuperation rate. The model is as follows: There are particles or individuals of type A and type B, interpreted as healthy and infected,…

Probability · Mathematics 2007-05-23 Harry Kesten , Vladas Sidoravicius

Understanding tumor invasion and metastasis is of crucial importance for both fundamental cancer research and clinical practice. In vitro experiments have established that the invasive growth of malignant tumors is characterized by the…

Biological Physics · Physics 2023-07-19 Yang Jiao , Salvatore Torquato

Crohn's disease (CD) is associated with an ecological imbalance of the intestinal microbiota, consisting of hundreds of species. The underlying complexity as well as individual differences between patients contributes to the difficulty to…

Molecular Networks · Quantitative Biology 2017-09-19 Eugen Bauer , Ines Thiele

The incubation period of a disease is the time between an initiating pathologic event and the onset of symptoms. For typhoid fever, polio, measles, leukemia and many other diseases, the incubation period is highly variable. Some affected…

Populations and Evolution · Quantitative Biology 2017-06-01 Bertrand Ottino-Loffler , Jacob G. Scott , Steven H. Strogatz

Catch-bonds, whereby noncovalent ligand-receptor interactions are counterintuitively reinforced by tensile forces, play a major role in cell adhesion under mechanical stress. A basic prerequisite for catch-bond formation is that…

Biological Physics · Physics 2023-03-09 Xingyue Guan , Yunqiang Bian , Yi Cao , Wenfei Li , Wei Wang

Carbon fibers (CFs) are prone to extensive oxidation under fire attack, for instance, in an aircraft fire scenario. This work addresses the damage mechanisms observed on polyacrylonitrile (PAN)-based CFs with different microstructure…

The evolution and emergence of antibiotic resistance is a major public health concern. The understanding of the within-host microbial dynamics combining mutational processes, horizontal gene transfer and resource consumption, is one of the…

Populations and Evolution · Quantitative Biology 2020-03-09 Ramsès Djidjou-Demasse , Samuel Alizon , Mircea T. Sofonea