Related papers: 3-color Bounded Patterned Self-assembly
In this paper, we critically examine Deng's "P=NP" [Den24]. The paper claims that there is a polynomial-time algorithm that decides 3-coloring for graphs with vertices of degree at most 4, which is known to be an NP-complete problem. Deng…
In this paper, we consider the problem of identifying patterns of interest in colored strings. A colored string is a string where each position is assigned one of a finite set of colors. Our task is to find substrings of the colored string…
A three-path-configuration is a graph consisting of three pairwise internally-disjoint paths the union of every two of which is an induced cycle of length at least four. A graph is 3PC-free if no induced subgraph of it is a…
We study the problem of determining whether a given temporal specification can be implemented by a symmetric system, i.e., a system composed from identical components. Symmetry is an important goal in the design of distributed systems,…
For a graph $G$, a vertex coloring $f$ is called nonrepetitive if for all $k\in\mathbb N$ and all $P_{2k}=\langle v_1, \cdots, v_k,v_{k+1}, \cdots, v_{2k}\rangle$ (path of $2k$ vertices) in $G$, there must be some $1\le i\le k$ such that…
We present a Satisfiability (SAT)-based approach for building Mixed Covering Arrays with Constraints of minimum length, referred to as the Covering Array Number problem. This problem is central in Combinatorial Testing for the detection of…
Interpreting three-leaf binary trees or {\em rooted triples} as constraints yields an entailment relation, whereby binary trees satisfying some rooted triples must also thus satisfy others, and thence a closure operator, which is known to…
In 1978 Babai raised the question whether all minimal Cayley graphs have bounded chromatic number; in 1994 he conjectured a negative answer. In this paper we show that any minimal Cayley graph of a (finitely generated) generalized dihedral…
Independent Set Reconfiguration is one of the most well-studied problems in the setting of combinatorial reconfiguration. It is known that the problem is PSPACE-complete even for graphs of bounded bandwidth. This fact rules out the…
The process of self-assembly is guided by the minimization of free energy, which limits the symmetries available for assembly and ultimately the usefulness of devices fabricated in this fashion. Here, we demonstrate experimentally for the…
The spectra of signed matrices have played a fundamental role in social sciences, graph theory, and control theory. In this work, we investigate the computational problems of identifying symmetric signings of matrices with natural spectral…
For positive integers $n,r,s$ with $r > s$, the set-coloring Ramsey number $R(n;r,s)$ is the minimum $N$ such that if every edge of the complete graph $K_N$ receives a set of $s$ colors from a palette of $r$ colors, then there is guaranteed…
We prove that path puzzles with complete row and column information--or equivalently, 2D orthogonal discrete tomography with Hamiltonicity constraint--are strongly NP-complete, ASP-complete, and #P-complete. Along the way, we newly…
Most approaches to the synthesis of reactive systems study the problem in terms of a two-player game with complete observation. In many applications, however, the system's environment consists of several distinct entities, and the system…
This paper investigates several classical and novel variations of the Erd\H{o}s--Szekeres problem, including multicolored point sets, convex hexagons with a given number of interior points, and polygons with constraints on edge colors. We…
Tile assembly systems in the abstract Tile Assembly Model (aTAM) are computationally universal and capable of building complex shapes, but DNA-based implementations encounter formidable error rates that stifle this theoretical potential.…
We study colored coverage and clustering problems. Here, we are given a colored point set where the points are covered by (unknown) $k$ clusters, which are monochromatic (i.e., all the points covered by the same cluster, have the same…
Sequence-directed assembly processes - such as protein folding - allow the assembly of a large number of structures with high accuracy from only a small handful of fundamental building blocks. We aim to explore how efficiently sequence…
In the light of recent studies of BPS triple junctions in the Wess-Zumino model we describe techniques to construct infinite lattices using similar junctions. It is shown that whilst these states are only approximately locally BPS they are…
In \cite{J}, Theorem 4.2, Jockusch proves that for any computable k-coloring of pairs of integers, there is an infinite $\Pi^0_2$ homogeneous set. The proof uses a countable collection of $\Pi^0_2$ sets as potential infinite homogeneous…