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The amplitudes of refined Chern-Simons (CS) theory, colored by antisymmetric (or symmetric) representations, conjecturally generate the Lambda^r- (or S^r-) colored triply graded homology of (n,m) torus knots. This paper is devoted to the…
We propose a generalized version of knots-quivers correspondence, where the quiver series variables specialize to arbitrary powers of the knot HOMFLY-PT polynomial series variable. We explicitely compute quivers for large classes of knots,…
In mathematical phylogenetics, evolutionary relationships are often represented by trees and networks. The latter are typically used whenever the relationships cannot be adequately described by a tree, which happens when so-called…
We model the typical behavior of knots and links using grid diagrams. Links are ubiquitous in the sciences, and their "normal" or "typical" behavior is of significant importance in understanding situations such as the topological state of…
Recently, Kashaev and the first author constructed an $R$-matrix from a Nichols algebra with an automorphism, that leads, via the Reshetikhin--Turaev functor, to a multivariable polynomial invariant of knots. Applying this to a rank 2…
In this paper, we construct invariants of braids, knots and links by studying dynamics of points in $\R^{2}$ and applying the Ptolemy relation $ac+bd=xy$.
Random braids that are formed by multiplying randomly chosen permutation braids are studied by analyzing their behavior under Garside's weighted decomposition and cycling. Using this analysis, we propose a polynomial-time algorithm to the…
In this paper we discuss the applications of knotoids to modelling knots in open curves and produce new knotoid invariants. We show how invariants of knotoids generally give rise to well-behaved measures of how much an open curve is…
Search for possible relationships between phylogeny and ontogeny is one of the most important issues in the field of evolutionary developmental biology. By representing developmental dynamics of spatially located cells with gene expression…
A companion paper to "On knot Floer homology in branched double covers" applied to braided branched loci. We reprove the main result of that paper concerning alternating branched loci when projected to an annulus, without using Khovanov…
We present a universal knot polynomials for 2- and 3-strand torus knots in adjoint representation, by universalization of appropriate Rosso-Jones formula. According to universality, these polynomials coincide with adjoined colored HOMFLY…
The cosmetic crossing conjecture posits that switching a non-trivial crossing in a knot diagram always changes the knot type. Generalizing work of Balm, Friedl, Kalfagianni and Powell, and of Lidman and Moore, we give an Alexander…
We present an elementary introduction to one of the most important today knot theory approaches, which gives rise to a representation for a class of knot polynomials in terms of quantum groups. Historically, the approach was at the same…
As a generalization of the classical knots, knotoids deal with the open ended knot diagrams in a surface. In recent years, many polynomial invariants for knotoids have appeared, such as the bracket polynomial, the index polynomial and the…
In this paper we use artificial neural networks to predict and help compute the values of certain knot invariants. In particular, we show that neural networks are able to predict when a knot is quasipositive with a high degree of accuracy.…
Extreme deformations of the DNA double helix attracted a lot of attention during the past decades. Particularly, the determination of the persistence length of DNA with extreme local disruptions, or kinks, has become a crucial problem in…
The perturbed Alexander invariant $\rho_1$, defined by Bar-Natan and van der Veen, is a powerful, easily computable polynomial knot invariant with deep connections to the Alexander and colored Jones polynomials. We study the behavior of…
We investigate the coefficients of the highest and lowest terms (also called the head and the tail) of the colored Jones polynomial and show that they stabilize for alternating links and for adequate links. To do this we apply techniques…
We exhibit an infinite family of knots with the property that the first coefficient of the n-colored Jones polynomial grows linearly with n. This shows that the concept of stability and tail seen in the colored Jones polynomials of…
We review the polynomial parameterization of classical knots and prove the analogous results for long $2$ knots. We also construct polynomial parameterizations for certain classes of knotted spheres (such as spun and twist spun of the…