Related papers: Mapping the File Systems Genome: rationales, techn…
Since the release of human genome sequences, one of the most important research issues is about indexing the genome sequences, and the suffix tree is most widely adopted for that purpose. The traditional suffix tree construction algorithms…
Among storage components, hard disk drives (HDDs) have become the most commonly-used type of non-volatile storage due to their recent technological advances, including, enhanced energy efficacy and significantly-improved areal density. Such…
Heterogeneity is a ubiquitous property of many biological systems and has profound implications for computation. While it is conceivable to optimize neuronal and synaptic heterogeneity for a specific task, such top-down optimization is…
Distributed File Systems (DFS) have emerged as sophisticated solutions for efficient file storage and management across interconnected computer nodes. The main objective of DFS is to achieve flexible, scalable, and resilient file storage…
Read mapping is a fundamental, yet computationally-expensive step in many genomics applications. It is used to identify potential matches and differences between fragments (called reads) of a sequenced genome and an already known genome…
Technologies for sequencing (reading) and synthesizing (writing) DNA have progressed on a Moore's law-like trajectory over the last three decades. This has motivated the idea of using DNA for data storage. Theoretically, DNA-based storage…
This paper describes the system of storage, extract and processing of information structured similarly to the natural language. For recursive inference the system uses the rules having the same representation, as the data. The environment…
To support comparative genomics, population genetics, and medical genetics, we propose that a reference genome should come with a scheme for mapping each base in any DNA string to a position in that reference genome. We refer to a…
Virtual file systems are a tool to centralize and mobilize a file system that could otherwise be complex and consist of multiple hierarchies, hard disks, and more. In this paper, we discuss the design of Unix-based file systems and how this…
Genotype networks are a method used in systems biology to study the "innovability" of a set of genotypes having the same phenotype. In the past they have been applied to determine the genetic heterogeneity, and stability to mutations, of…
Heterogeneous Distributed Storage Systems (DSSs) are close to the real world applications for data storage. Each node of the considered DSS, may store different number of packets and each having different repair bandwidth with uniform…
Document segmentation is a method of rending the document into distinct regions. A document is an assortment of information and a standard mode of conveying information to others. Pursuance of data from documents involves ton of human…
Phenotypes are the observable characteristics of an organism arising from its response to the environment. Phenotypes associated with engineered and natural genetic variation are widely recorded using phenotype ontologies in model…
A mechanism-free and symbol-agnostic conservation principle, the Conservation of Hartley-Shannon Information (CoHSI) is predicted to constrain the structure of discrete systems regardless of their origin or function. Despite their distinct…
A file system optimization is the most common task in the file system field. Usually, it is seen as the key file system problem. Moreover, it is possible to state that optimization is dominant in commercial development. A problem of a new…
In the case of malware analysis, categorization of malicious files is an essential part after malware detection. Numerous static and dynamic techniques have been reported so far for categorizing malware. This research presents a deep…
A file system standard for use with write-once media such as digital compact disks is proposed. The file system is designed to work with any operating system and a variety of physical media. Although the implementation is simple, it…
This paper proposes a novel approach for storing and retrieving massive DNA sequences.. The method is based on a perceptual hash function, commonly used to determine the similarity between digital images, that we adapted for DNA sequences.…
We present a framework based on conditional entropy and the Dirichlet distribution for classifying chromosomes based on the degree to which they use synonymous codons uniformly or preferentially, that is, whether or not codons that code for…
The article provides a new approach to creating hierarchical structure of file system. First, it gives overview of the existing ways of storing files in current operating systems. Second, it describes the new way of building structures of a…