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Molecular graphs generally contain subgraphs (known as groups) that are identifiable and significant in composition, functionality, geometry, etc. Flat latent representations (node embeddings or graph embeddings) fail to represent, and…
A half-square of a bipartite graph $B=(X,Y,E_B)$ has one color class of $B$ as vertex set, say $X$; two vertices are adjacent whenever they have a common neighbor in $Y$. If $G=(V,E_G)$ is the half-square of a planar bipartite graph…
We propose a novel way of generalizing the class of interval graphs, via a graph width parameter called the simultaneous interval number. This parameter is related to the simultaneous representation problem for interval graphs and defined…
We demonstrate that graph-based models are fully capable of representing higher-order interactions, and have a long history of being used for precisely this purpose. This stands in contrast to a common claim in the recent literature on…
It has been known since 1991 that the problem of recognizing grid intersection graphs is NP-complete. Here we use a modified argument of the above result to show that even if we restrict to the class of unit grid intersection graphs…
Motivated by interpretability and reliability, we investigate whether large language models (LLMs) deploy universal geometric structures to encode discrete, graph-structured knowledge. To this end, we present two complementary experimental…
Graph Neural Networks (GNNs) are a powerful representational tool for solving problems on graph-structured inputs. In almost all cases so far, however, they have been applied to directly recovering a final solution from raw inputs, without…
Representation learning on graphs has been gaining attention due to its wide applicability in predicting missing links, and classifying and recommending nodes. Most embedding methods aim to preserve certain properties of the original graph…
An open question in the theory of word-representable graphs for the past decade has been whether the line graph of a non-word-representable graph is always non-word-representable. By formulating an appropriate optimization problem for the…
Knowledge graphs have garnered significant research attention and are widely used to enhance downstream applications. However, most current studies mainly focus on static knowledge graphs, whose facts do not change with time, and disregard…
A \emph{temporal graph} is, informally speaking, a graph that changes with time. When time is discrete and only the relationships between the participating entities may change and not the entities themselves, a temporal graph may be viewed…
In this paper, we define and study the new problem Simultaneous PQ-Ordering. Its input consists of a set of PQ-trees, which represent sets of circular orders of their leaves, together with a set of child-parent relations between these…
A maximal matching $M$ that consists of independent edges is a subgraph of a simple and undirected graph $G$ for which $G-M$ forms an independent set. A graph $G$ is called equimatchable if all maximal matchings have the same number of…
This is a survey article for "Handbook of Linear Algebra", 2nd ed., Chapman & Hall/CRC, 2014. An informal introduction to representations of quivers and finite dimensional algebras from a linear algebraist's point of view is given. The…
We consider the complexity of the recognition problem for two families of combinatorial structures. A graph $G=(V,E)$ is said to be an intersection graph of lines in space if every $v\in V$ can be mapped to a straight line $\ell (v)$ in…
A split graph is a graph whose vertex set can be partitioned into a clique and an independent set. The word-representability of split graphs was studied in a series of papers in the literature, and the class of word-representable split…
This paper does not describe a working system. Instead, it presents a single idea about representation which allows advances made by several different groups to be combined into an imaginary system called GLOM. The advances include…
Representing a graph as a vector is a challenging task; ideally, the representation should be easily computable and conducive to efficient comparisons among graphs, tailored to the particular data and analytical task at hand. Unfortunately,…
A graph is said to be a segment graph if its vertices can be mapped to line segments in the plane such that two vertices have an edge between them if and only if their corresponding line segments intersect. Kratochv\'{i}l and Kub\v{e}na…
We study the problem of generating graphs with prescribed degree sequences for bipartite, directed, and undirected networks. We first propose a sequential method for bipartite graph generation and establish a necessary and sufficient…