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Various approaches to gene selection for cancer classification based on microarray data can be found in the literature and they may be grouped into two categories: univariate methods and multivariate methods. Univariate methods look at each…

Quantitative Methods · Quantitative Biology 2015-06-18 Min Xu , Rudy Setiono

Through genome-wide association studies (GWAS), disease susceptible genetic variables can be identified by comparing the genetic data of individuals with and without a specific disease. However, the discovery of these associations poses a…

Machine Learning · Computer Science 2023-08-15 Zhendong Sha , Yuanzhu Chen , Ting Hu

Motivation: Gene selection has become a common task in most gene expression studies. The objective of such research is often to identify the smallest possible set of genes that can still achieve good predictive performance. The problem of…

Feature selection is a vital technique in machine learning, as it can reduce computational complexity, improve model performance, and mitigate the risk of overfitting. However, the increasing complexity and dimensionality of datasets pose…

Machine Learning · Computer Science 2024-07-24 Yuepeng Chen , Weiping Ding , Hengrong Ju , Jiashuang Huang , Tao Yin

The selection of features is an essential data preprocessing stage in data mining. The core principle of feature selection seems to be to pick a subset of possible features by excluding features with almost no predictive information as well…

Machine Learning · Computer Science 2020-08-11 Mehrdad Rostami , Kamal Berahmand , Saman Forouzandeh

The Fuzzy Gene Filter (FGF) is an optimised Fuzzy Inference System designed to rank genes in order of differential expression, based on expression data generated in a microarray experiment. This paper examines the effectiveness of the FGF…

Machine Learning · Computer Science 2011-08-24 Meir Perez , Tshilidzi Marwala

Sequencing costs currently prohibit the application of single-cell mRNA-seq to many biological and clinical analyses. Targeted single-cell mRNA-sequencing reduces sequencing costs by profiling reduced gene sets that capture biological…

Genomics · Quantitative Biology 2022-02-15 Xiaoqiao Chen , Sisi Chen , Matt Thomson

As a well-known clustering algorithm, Fuzzy C-Means (FCM) allows each input sample to belong to more than one cluster, providing more flexibility than non-fuzzy clustering methods. However, the accuracy of FCM is subject to false detections…

Artificial Intelligence · Computer Science 2017-05-31 Meysam Ghaffari , Nasser Ghadiri

The size of web has increased exponentially over the past few years with thousands of documents related to a subject available to the user. With this much amount of information available, it is not possible to take the full advantage of the…

Information Retrieval · Computer Science 2012-11-07 R. K. Roul , S. K. Sahay

In recent years the importance of finding a meaningful pattern from huge datasets has become more challenging. Data miners try to adopt innovative methods to face this problem by applying feature selection methods. In this paper we propose…

Machine Learning · Computer Science 2014-03-11 Mehdi Naseriparsa , Amir-masoud Bidgoli , Touraj Varaee

Feature selection involes identifying the most relevant subset of input features, with a view to improving generalization of predictive models by reducing overfitting. Directly searching for the most relevant combination of attributes is…

Machine Learning · Computer Science 2014-10-28 Jayadeva , Sanjit S. Batra , Siddharth Sabharwal

We propose a novel methodology for feature screening in clustering massive datasets, in which both the number of features and the number of observations can potentially be very large. Taking advantage of a fusion penalization based convex…

Methodology · Statistics 2017-10-05 Trambak Banerjee , Gourab Mukherjee , Peter Radchenko

Clustering is an important facet of explorative data mining and finds extensive use in several fields. In this paper, we propose an extension of the classical Fuzzy C-Means clustering algorithm. The proposed algorithm, abbreviated as VFC,…

Computer Vision and Pattern Recognition · Computer Science 2016-11-18 Srinjoy Ganguly , Digbalay Bose , Amit Konar

Instead of directly utilizing an observed image including some outliers, noise or intensity inhomogeneity, the use of its ideal value (e.g. noise-free image) has a favorable impact on clustering. Hence, the accurate estimation of the…

Computer Vision and Pattern Recognition · Computer Science 2020-10-12 Cong Wang , Witold Pedrycz , ZhiWu Li , MengChu Zhou , Jun Zhao

The identification of co-regulated genes and their transcription-factor binding sites (TFBS) are the key steps toward understanding transcription regulation. In addition to effective laboratory assays, various bi-clustering algorithms for…

Machine Learning · Computer Science 2023-02-06 Kaijie Xu

In this paper, we present novel variations of an earlier approach called homogeneous clustering algorithm for reducing dataset size. The intuition behind the approaches proposed in this paper is to partition the dataset into homogeneous…

Machine Learning · Computer Science 2022-08-30 Shril Mody , Janvi Thakkar , Devvrat Joshi , Siddharth Soni , Rohan Patil , Nipun Batra

Cluster analysis which focuses on the grouping and categorization of similar elements is widely used in various fields of research. Inspired by the phenomenon of atomic fission, a novel density-based clustering algorithm is proposed in this…

Machine Learning · Computer Science 2020-04-28 Shizhan Lu

Segmentation of brain tumors from Magnetic Resonance Imaging (MRI) remains a pivotal challenge in medical image analysis due to the heterogeneous nature of tumor morphology and intensity distributions. Accurate delineation of tumor…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Dibya Jyoti Bora , Mrinal Kanti Mishra

Feature selection methods are widely used to address the high computational overheads and curse of dimensionality in classifying high-dimensional data. Most conventional feature selection methods focus on handling homogeneous features,…

Machine Learning · Computer Science 2021-11-17 Xuyang Yan , Mrinmoy Sarkar , Biniam Gebru , Shabnam Nazmi , Abdollah Homaifar

Clustering analysis is one of the most widely used statistical tools in many emerging areas such as microarray data analysis. For microarray and other high-dimensional data, the presence of many noise variables may mask underlying…

Machine Learning · Statistics 2008-03-26 Benhuai Xie , Wei Pan , Xiaotong Shen