Related papers: Predicting Parameters in Deep Learning
Recently developed deep learning techniques have significantly improved the accuracy of various speech and image recognition systems. In this paper we adapt some of these techniques for protein secondary structure prediction. We first train…
Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…
We study mechanisms to characterize how the asymptotic convergence of backpropagation in deep architectures, in general, is related to the network structure, and how it may be influenced by other design choices including activation type,…
The computational prediction of a protein structure from its sequence generally relies on a method to assess the quality of protein models. Most assessment methods rank candidate models using heavily engineered structural features, defined…
Even though probabilistic treatments of neural networks have a long history, they have not found widespread use in practice. Sampling approaches are often too slow already for simple networks. The size of the inputs and the depth of typical…
In recent years neural networks have achieved impressive results on many technological and scientific tasks. Yet, the mechanism through which these models automatically select features, or patterns in data, for prediction remains unclear.…
As machine learning systems get widely adopted for high-stake decisions, quantifying uncertainty over predictions becomes crucial. While modern neural networks are making remarkable gains in terms of predictive accuracy, characterizing…
Deploying deep learning models, comprising of non-linear combination of millions, even billions, of parameters is challenging given the memory, power and compute constraints of the real world. This situation has led to research into model…
Inferring parameters of macro-kinetic growth models, typically represented by Ordinary Differential Equations (ODE), from the experimental data is a crucial step in bioprocess engineering. Conventionally, estimates of the parameters are…
Deterministic neural nets have been shown to learn effective predictors on a wide range of machine learning problems. However, as the standard approach is to train the network to minimize a prediction loss, the resultant model remains…
Learning tasks such as those involving genomic data often poses a serious challenge: the number of input features can be orders of magnitude larger than the number of training examples, making it difficult to avoid overfitting, even when…
In Hezaveh et al. 2017 we showed that deep learning can be used for model parameter estimation and trained convolutional neural networks to determine the parameters of strong gravitational lensing systems. Here we demonstrate a method for…
Deep learning models have been widely used during the last decade due to their outstanding learning and abstraction capacities. However, one of the main challenges any scientist has to face using deep learning models is to establish the…
The ever-increasing number of parameters in deep neural networks poses challenges for memory-limited applications. Regularize-and-prune methods aim at meeting these challenges by sparsifying the network weights. In this context we quantify…
Recent findings have shown that highly over-parameterized Neural Networks generalize without pretraining or explicit regularization. It is achieved with zero training error, i.e., complete over-fitting by memorizing the training data. This…
We develop an algorithm for systematic design of a large artificial neural network using a progression property. We find that some non-linear functions, such as the rectifier linear unit and its derivatives, hold the property. The…
Prediction of molecular properties, including physico-chemical properties, is a challenging task in chemistry. Herein we present a new state-of-the-art multitask prediction method based on existing graph neural network models. We have used…
In this work, we build a generic architecture of Convolutional Neural Networks to discover empirical properties of neural networks. Our first contribution is to introduce a state-of-the-art framework that depends upon few hyper parameters…
Nowadays, the number of layers and of neurons in each layer of a deep network are typically set manually. While very deep and wide networks have proven effective in general, they come at a high memory and computation cost, thus making them…
Bayesian neural networks (BNNs) augment deep networks with uncertainty quantification by Bayesian treatment of the network weights. However, such models face the challenge of Bayesian inference in a high-dimensional and usually…