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In recent years there has been a paradigm shift from the study of local task-related activation to the organization and functioning of large-scale functional and structural brain networks. However, a long-standing challenge in this…

Quantitative Methods · Quantitative Biology 2025-11-26 Sixtus Dakurah

To synthesize proteins in a cell, an mRNA has to work with a finite pool of ribosomes. When this constraint is included in the modeling by a totally asymmetric simple exclusion process (TASEP), non-trivial consequences emerge. Here, we…

Statistical Mechanics · Physics 2010-09-01 L. Jonathan Cook , R. K. P. Zia

By generalizing the algebra of operators of the Asymmetric Simple Exclusion Process (ASEP), a multi-species ASEP in which particles can overtake each other,is defined on both open and closed one dimensional chains. On the ring the steady…

Condensed Matter · Physics 2009-10-31 V. karimipour

In a previous study we developed a mean-field theory of dynamical transitions for the totally-asymmetric simple-exclusion process (TASEP) with open boundaries and Langmuir kinetics, in the so-called balanced regime, characterized by equal…

Statistical Mechanics · Physics 2020-08-11 D. Botto , A. Pelizzola , M. Pretti , M. Zamparo

We show that the TASEP of a driven system of particles of arbitrary size, with nearest neighbor repulsive interaction, on an open lattice is equivalent to the TASEP of interacting monomers on an open lattice whose size fluctuates in…

Statistical Mechanics · Physics 2019-09-04 S. L. Narasimhan , A. Baumgaertner

Using Monte Carlo simulations and a domain wall theory, we discuss the effect of coupling several totally asymmetric simple exclusion processes (TASEPs) to a finite reservoir of particles. This simple model mimics directed biological…

Statistical Mechanics · Physics 2009-11-25 L. Jonathan Cook , R. K. P. Zia , B. Schmittmann

We consider the totally asymmetric simple exclusion process (TASEP) with two-sided Bernoulli initial condition, i.e., with left density rho_- and right density rho_+. We consider the associated height function, whose discrete gradient is…

Mathematical Physics · Physics 2015-05-18 Ivan Corwin , Patrik L. Ferrari , Sandrine Péché

The asymmetric simple exclusion process (ASEP) plays the role of a paradigm in non-equilibrium statistical mechanics. We review exact results for the ASEP obtained by Bethe ansatz and put emphasis on the algebraic properties of this model.…

Statistical Mechanics · Physics 2009-11-11 O. Golinelli , K. Mallick

We study the non-equilibrium steady states in a totally-asymmetric simple-exclusion process with periodic boundary conditions, also incorporating (i) an extra (nearest-neighbour) repulsive interaction and (ii) hopping rates characterized by…

Statistical Mechanics · Physics 2023-11-08 Beatrice Mina , Alex Paninforni , Alessandro Pelizzola , Marco Pretti

The Totally Asymmetric Simple Exclusion Process (TASEP) is an important example of a particle system driven by an irreversible Markov chain. In this paper we give a simple yet rigorous derivation of the chain stationary measure in the case…

Mathematical Physics · Physics 2015-09-30 Benedetto Scoppola , Carlo Lancia , Riccardo Mariani

We prove a hydrodynamic limit for the totally asymmetric simple exclusion process with spatially inhomogeneous jump rates given by a speed function that may admit discontinuities. The limiting density profiles are described with a…

Probability · Mathematics 2011-10-18 Nicos Georgiou , Rohini Kumar , Timo Seppalainen

We construct an algorithm that generates large, band-diagonal transition matrices for a totally asymmetric exclusion process (TASEP) with local hopping rate inhomogeneities. The matrices are diagonalized numerically to find steady-state…

Statistical Mechanics · Physics 2009-11-10 Tom Chou , Greg Lakatos

We study the steady state of the two-species Asymmetric Simple Exclusion Process (ASEP) with open boundary conditions. The matrix product method works for the determination of the stationary probability distribution. Several physical…

Statistical Mechanics · Physics 2007-05-23 Masaru Uchiyama

The multispecies asymmetric simple exclusion process (mASEP) is a Markov chain in which particles of different species hop along a one-dimensional lattice. This paper studies the doubly asymmetric simple exclusion process…

Combinatorics · Mathematics 2024-03-12 Yuhan Jiang

The transfer matrix and matrix multiplication ansatz, when applied to nonequilibrium steady states in asymmetric exclusion processed and traffic models, has given many exact results for phase diagrams, bulk densities and fluxes, as well as…

Statistical Mechanics · Physics 2007-05-23 L. G. Tilstra , M. H. Ernst

We consider the one-dimensional partially asymmetric exclusion process with random hopping rates, in which a fraction of particles (or sites) have a preferential jumping direction against the global drift. In this case the accumulated…

Disordered Systems and Neural Networks · Physics 2009-11-10 R. Juhasz , L. Santen , F. Igloi

In this paper, we study an exact solution of the asymmetric simple exclusion process on a periodic lattice of finite sites with two typical updates, i.e., random and parallel. Then, we find that the explicit formulas for the partition…

Statistical Mechanics · Physics 2009-05-19 Masahiro Kanai , Katsuhiro Nishinari , Tetsuji Tokihiro

We fully elucidate the structure of the hierarchy of the connected operators that commute with the Markov matrix of the Totally Asymmetric Exclusion Process (TASEP). We prove for the connected operators a combinatorial formula that was…

Statistical Mechanics · Physics 2009-11-13 O. Golinelli , K. Mallick

We study the boundary-driven asymmetric simple exclusion process (ASEP) in a one-dimensional chain with long-range links. Shortcuts are added to a chain by connecting $pL$ different pairs of sites selected randomly where $L$ and $p$ denote…

Statistical Mechanics · Physics 2011-05-24 Mina Kim , Ludger Santen , Jae Dong Noh

Current fluctuations for the one-dimensional totally asymmetric exclusion process (TASEP) connected to reservoirs of particles, and their large scale limit to the KPZ fixed point in finite volume, are studied using exact methods. Focusing…

Statistical Mechanics · Physics 2024-10-22 Sylvain Prolhac