Related papers: Faster Compact On-Line Lempel-Ziv Factorization
Indexing highly repetitive texts --- such as genomic databases, software repositories and versioned text collections --- has become an important problem since the turn of the millennium. A relevant compressibility measure for repetitive…
We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently. Any…
We present a simpler and faster algorithm for low-diameter decompositions on directed graphs, matching the $O(\log n\log\log n)$ loss factor from Bringmann, Fischer, Haeupler, and Latypov (ICALP 2025) and improving the running time to…
We describe a RAM algorithm computing all runs (maximal repetitions) of a given string of length $n$ over a general ordered alphabet in $O(n\log^{\frac{2}3} n)$ time and linear space. Our algorithm outperforms all known solutions working in…
Given a sequence of integers, we want to find a longest increasing subsequence of the sequence. It is known that this problem can be solved in $O(n \log n)$ time and space. Our goal in this paper is to reduce the space consumption while…
Let $T$ be a string of length $n$ over an integer alphabet of size $\sigma$. In the word RAM model, $T$ can be represented in $O(n /\log_\sigma n)$ space. We show that a representation of all covers of $T$ can be computed in the optimal…
We present two new and efficient algorithms for computing all-pairs shortest paths. The algorithms operate on directed graphs with real (possibly negative) weights. They make use of directed path consistency along a vertex ordering d. Both…
A classic data structure problem is to preprocess a string T of length $n$ so that, given a query $q$, we can quickly find all substrings of T with Hamming distance at most $k$ from the query string. Variants of this problem have seen…
Relative Lempel-Ziv (RLZ) parsing is a dictionary compression method in which a string $S$ is compressed relative to a second string $R$ (called the reference) by parsing $S$ into a sequence of substrings that occur in $R$. RLZ is…
The Erd\H{o}s-Ginzburg-Ziv theorem states that for any sequence of $2n-1$ integers, there exists a subsequence of $n$ elements whose sum is divisible by $n$. In this article, we provide a simple, practical $O(n\log\log n)$ algorithm and a…
We study the problem of supporting queries on a string $S$ of length $n$ within a space bounded by the size $\gamma$ of a string attractor for $S$. Recent works showed that random access on $S$ can be supported in optimal…
Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…
We propose algorithms that, given the input string of length $n$ over integer alphabet of size $\sigma$, construct the Burrows-Wheeler transform (BWT), the permuted longest-common-prefix (PLCP) array, and the LZ77 parsing in…
For many kinds of prefix-free codes there are efficient and compact alternatives to the traditional tree-based representation. Since these put the codes into canonical form, however, they can only be used when we can choose the order in…
An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent words have been computed in genomes of organisms from all domains of life; their…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
In this paper, we present the first study of the computational complexity of converting an automata-based text index structure, called the Compact Directed Acyclic Word Graph (CDAWG), of size $e$ for a text $T$ of length $n$ into other text…
The net frequency (NF) of a string, of length $m$, in a text, of length $n$, is the number of occurrences of the string in the text with unique left and right extensions. Recently, Guo et al. [CPM 2024] showed that NF is combinatorially…
We introduce height-bounded LZ encodings (LZHB), a new family of compressed representations that are variants of Lempel-Ziv parsings with a focus on bounding the worst-case access time to arbitrary positions in the text directly via the…
This paper presents a new technique for deterministic length reduction. This technique improves the running time of the algorithm presented in \cite{LR07} for performing fast convolution in sparse data. While the regular fast convolution of…