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A data analysis pipeline is a structured sequence of steps that transforms raw data into meaningful insights by integrating multiple analysis algorithms. In many practical applications, analytical findings are obtained only after data pass…

Machine Learning · Statistics 2026-05-04 Yugo Miyata , Tomohiro Shiraishi , Shuichi Nishino , Ichiro Takeuchi

Single-cell RNA sequencing (scRNA-seq) enables researchers to analyze gene expression at single-cell level. One important task in scRNA-seq data analysis is unsupervised clustering, which helps identify distinct cell types, laying down the…

Genomics · Quantitative Biology 2023-12-29 Weikang Jiang , Jinxian Wang , Jihong Guan , Shuigeng Zhou

Meta-analyses frequently include trials that report multiple effect sizes based on a common set of study participants. These effect sizes will generally be correlated. Cluster-robust variance-covariance estimators are a fruitful approach…

Methodology · Statistics 2022-03-07 Thilo Welz , Wolfgang Viechtbauer , Markus Pauly

Clustering is an unsupervised technique of Data Mining. It means grouping similar objects together and separating the dissimilar ones. Each object in the data set is assigned a class label in the clustering process using a distance measure.…

Information Retrieval · Computer Science 2011-10-13 Parul Agarwal , M. Afshar Alam , Ranjit Biswas

Transcript enumeration methods such as SAGE, MPSS, and sequencing-by-synthesis EST ``digital northern'', are important high-throughput techniques for digital gene expression measurement. As other counting or voting processes, these…

Quantitative Methods · Quantitative Biology 2013-10-29 Ricardo ZN Vêncio , Leonardo Varuzza , Carlos AB Pereira , Helena Brentani , Ilya Shmulevich

Clustering is the task of gathering similar data samples into clusters without using any predefined labels. It has been widely studied in machine learning literature, and recent advancements in deep learning have revived interest in this…

Machine Learning · Computer Science 2023-09-04 Mohammadreza Sadeghi , Hadi Hojjati , Narges Armanfard

In many applications of X-ray computed tomography, an unsupervised segmentation of the reconstructed 3D volumes forms an important step in the image processing chain for further investigation of the digitized object. Therefore, the goal is…

Computer Vision and Pattern Recognition · Computer Science 2023-03-09 Thomas Lang

In high-dimension, low-sample size (HDLSS) data, it is not always true that closeness of two objects reflects a hidden cluster structure. We point out the important fact that it is not the closeness, but the "values" of distance that…

Machine Learning · Statistics 2013-12-30 Yoshikazu Terada

Many studies in data mining have proposed a new learning called semi-Supervised. Such type of learning combines unlabeled and labeled data which are hard to obtain. However, in unsupervised methods, the only unlabeled data are used. The…

Machine Learning · Computer Science 2013-04-16 Badreddine Meftahi , Ourida Ben Boubaker Saidi

Subspace clustering refers to the problem of clustering high-dimensional data points into a union of low-dimensional linear subspaces, where the number of subspaces, their dimensions and orientations are all unknown. In this paper, we…

Machine Learning · Statistics 2014-03-17 Reinhard Heckel , Eirikur Agustsson , Helmut Bölcskei

Many applications from the financial industry successfully leverage clustering algorithms to reveal meaningful patterns among a vast amount of unstructured financial data. However, these algorithms suffer from a lack of interpretability…

Applications · Statistics 2020-07-24 Enguerrand Horel , Kay Giesecke , Victor Storchan , Naren Chittar

We study the following distribution clustering problem: Given a hidden partition of $k$ distributions into two groups, such that the distributions within each group are the same, and the two distributions associated with the two clusters…

Data Structures and Algorithms · Computer Science 2025-12-10 Gunjan Kumar , Yash Pote , Jonathan Scarlett

Unsupervised machine learning, and in particular data clustering, is a powerful approach for the analysis of datasets and identification of characteristic features occurring throughout a dataset. It is gaining popularity across scientific…

Mesoscale and Nanoscale Physics · Physics 2021-03-23 Maria El Abbassi , Jan Overbeck , Oliver Braun , Michel Calame , Herre S. J. van der Zant , Mickael L. Perrin

Statistical significance of network clustering has been an unresolved problem since it was observed that community detection algorithms produce false positives even in random graphs. After a phase transition between undetectable and…

Social and Information Networks · Computer Science 2016-05-03 Jeremi K. Ochab

An important issue in clustering concerns the avoidance of false positives while searching for clusters. This work addressed this problem considering agglomerative methods, namely single, average, median, complete, centroid and Ward's…

Machine Learning · Computer Science 2020-06-30 Eric K. Tokuda , Cesar H. Comin , Luciano da F. Costa

Measuring graph clustering quality remains an open problem. To address it, we introduce quality measures based on comparisons of intra- and inter-cluster densities, an accompanying statistical test of the significance of their differences…

Social and Information Networks · Computer Science 2020-03-20 Pierre Miasnikof , Alexander Y. Shestopaloff , Anthony J. Bonner , Yuri Lawryshyn , Panos M. Pardalos

Clustering analysis of functional data, which comprises observations that evolve continuously over time or space, has gained increasing attention across various scientific disciplines. Practical applications often involve functional data…

Methodology · Statistics 2024-06-19 Tingyu Zhu , Lan Xue , Carmen Tekwe , Keith Diaz , Mark Benden , Roger Zoh

We address the problem of un-supervised soft-clustering called micro-clustering. The aim of the problem is to enumerate all groups composed of records strongly related to each other, while standard clustering methods separate records at…

Data Structures and Algorithms · Computer Science 2016-06-07 Takeaki Uno , Hiroki Maegawa , Takanobu Nakahara , Yukinobu Hamuro , Ryo Yoshinaka , Makoto Tatsuta

Mean shift is a simple interactive procedure that gradually shifts data points towards the mode which denotes the highest density of data points in the region. Mean shift algorithms have been effectively used for data denoising, mode…

Machine Learning · Computer Science 2021-05-11 Saptarshi Chakraborty , Debolina Paul , Swagatam Das

Clustering is a fundamental problem in data analysis. In differentially private clustering, the goal is to identify $k$ cluster centers without disclosing information on individual data points. Despite significant research progress, the…

Machine Learning · Computer Science 2021-12-30 Edith Cohen , Haim Kaplan , Yishay Mansour , Uri Stemmer , Eliad Tsfadia