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A chain is defined as a directed acyclic graph (DAG) with one source and one sink, where the children are ordered and the spanning tree computed using a depth-first search is a path. Such DAGs emerge in the context of tree compression and…

Combinatorics · Mathematics 2026-04-22 Michael Wallner

Unranked trees can be represented using their minimal dag (directed acyclic graph). For XML this achieves high compression ratios due to their repetitive mark up. Unranked trees are often represented through first child/next sibling (fcns)…

Data Structures and Algorithms · Computer Science 2013-09-24 Mireille Bousquet-Melou , Markus Lohrey , Sebastian Maneth , Eric Noeth

A DAG compression of a (typically dense) graph is a simple data structure that stores how vertex clusters are connected, where the clusters are described indirectly as sets of reachable sinks in a directed acyclic graph (DAG). They…

Data Structures and Algorithms · Computer Science 2026-03-24 Florian Chudigiewitsch , Till Tantau , Felix Winkler

We introduce a new compression scheme for labeled trees based on top trees. Our compression scheme is the first to simultaneously take advantage of internal repeats in the tree (as opposed to the classical DAG compression that only exploits…

Data Structures and Algorithms · Computer Science 2014-05-13 Philip Bille , Inge Li Goertz , Gad M. Landau , Oren Weimann

An encoding of directed acyclic graphs (DAGs) on labeled vertices is proposed, which is a generalisation of the Pr\"ufer code for labeled trees, if a certain orienation on the edges of the tree is introduced. Hence it is shown that the…

Combinatorics · Mathematics 2023-04-04 Zsófia Juhász

Measuring the complexity of tree structures can be beneficial in areas that use tree data structures for storage, communication, and processing purposes. This complexity can then be used to compress tree data structures to their…

Information Theory · Computer Science 2023-09-19 Amirmohammad Farzaneh , Mihai-Alin Badiu , Justin P. Coon

The definition of $k^{th}$-order empirical entropy of strings is extended to node labelled binary trees. A suitable binary encoding of tree straight-line programs (that have been used for grammar-based tree compression before) is shown to…

Data Structures and Algorithms · Computer Science 2020-05-21 Danny Hucke , Markus Lohrey , Louisa Seelbach Benkner

Directed acyclic graphs (DAGs) with hidden variables are often used to characterize causal relations between variables in a system. When some variables are unobserved, DAGs imply a notoriously complicated set of constraints on the…

Machine Learning · Statistics 2023-02-23 Noam Finkelstein , Beata Zjawin , Elie Wolfe , Ilya Shpitser , Robert W. Spekkens

We consider the top tree compression scheme introduced by Bille et al. [ICALP 2013] and construct an infinite family of trees on $n$ nodes labeled from an alphabet of size $\sigma$, for which the size of the top DAG is…

Data Structures and Algorithms · Computer Science 2018-01-04 Bartłomiej Dudek , Paweł Gawrychowski

Directed acyclic graphical models (DAGs) are often used to describe common structural properties in a family of probability distributions. This paper addresses the question of classifying DAGs up to an isomorphism. By considering Gaussian…

Information Theory · Computer Science 2014-12-24 Hajir Roozbehani , Yury Polyanskiy

We study the following generalization of the well-known model of broadcasting on trees. Consider an infinite directed acyclic graph (DAG) with a unique source node $X$. Let the collection of nodes at distance $k$ from $X$ be called the…

Information Theory · Computer Science 2018-03-21 Anuran Makur , Elchanan Mossel , Yury Polyanskiy

It is shown that for a given ordered node-labelled tree of size $n$ and with $s$ many different node labels, one can construct in linear time a top dag of height $O(\log n)$ and size $O(n / \log_\sigma n) \cap O(d \cdot \log n)$, where…

Data Structures and Algorithms · Computer Science 2017-12-19 Markus Lohrey , Carl Philipp Reh , Kurt Sieber

Predicting answers to queries over knowledge graphs is called a complex reasoning task because answering a query requires subdividing it into subqueries. Existing query embedding methods use this decomposition to compute the embedding of a…

Databases · Computer Science 2025-02-26 Yunjie He , Bo Xiong , Daniel Hernández , Yuqicheng Zhu , Evgeny Kharlamov , Steffen Staab

In many situations, it would be useful to know not just the best phylogenetic tree for a given data set, but the collection of high-quality trees. This goal is typically addressed using Bayesian techniques, however, current Bayesian methods…

Populations and Evolution · Quantitative Biology 2023-10-27 Will Dumm , Mary Barker , William Howard-Snyder , William S. DeWitt , Frederick A. Matsen

Deep learning has shown impressive results obtained at the cost of training huge neural networks. However, the larger the architecture, the higher the computational, financial, and environmental costs during training and inference. We aim…

Recovering underlying Directed Acyclic Graph (DAG) structures from observational data is highly challenging due to the combinatorial nature of the DAG-constrained optimization problem. Recently, DAG learning has been cast as a continuous…

Machine Learning · Computer Science 2022-12-23 Zhen Zhang , Ignavier Ng , Dong Gong , Yuhang Liu , Ehsan M Abbasnejad , Mingming Gong , Kun Zhang , Javen Qinfeng Shi

Obtaining continuous representations of structural data such as directed acyclic graphs (DAGs) has gained attention in machine learning and artificial intelligence. However, embedding complex DAGs in which both ancestors and descendants of…

Machine Learning · Computer Science 2019-05-16 Ryota Suzuki , Ryusuke Takahama , Shun Onoda

Directed acyclic graphs (DAGs) are commonly used to model causal relationships among random variables. In general, learning the DAG structure is both computationally and statistically challenging. Moreover, without additional information,…

Machine Learning · Statistics 2024-03-26 Ali Shojaie , Wenyu Chen

Broadcasting in a computer network is a method of transferring a message to all recipients simultaneously. It is common in this situation to use a tree with many leaves to perform the broadcast, as internal nodes have to forward the…

Data Structures and Algorithms · Computer Science 2020-07-16 Cristina G. Fernandes , Carla N. Lintzmayer

Directed acyclic graphs (DAGs) are a class of graphs commonly used in practice, with examples that include electronic circuits, Bayesian networks, and neural architectures. While many effective encoders exist for DAGs, it remains…

Machine Learning · Computer Science 2025-05-30 Michael Sun , Orion Foo , Gang Liu , Wojciech Matusik , Jie Chen
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