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A monotone drawing of a graph G is a straight-line drawing of G such that every pair of vertices is connected by a path that is monotone with respect to some direction. Trees, as a special class of graphs, have been the focus of several…

Data Structures and Algorithms · Computer Science 2025-05-19 Anargyros Oikonomou , Antonios Symvonis

For an additive submonoid $\mathcal{M}$ of $\mathbb{R}_{\ge 0}$, the weight of an $\mathcal{M}$-labeled directed graph is the sum of all of its edge labels, while the content is the product of the labels. Having fixed $\mathcal{M}$ and a…

Combinatorics · Mathematics 2020-04-24 Alexandru Chirvasitu

The objective of clustering is to discover natural groups in datasets and to identify geometrical structures which might reside there, without assuming any prior knowledge on the characteristics of the data. The problem can be seen as…

Computational Geometry · Computer Science 2018-01-26 Luis-Evaristo Caraballo , José-Miguel Díaz-Báñez , Nadine Kroher

A statistically principled way of conducting weighted network analysis is still lacking. Comparison of different populations of weighted networks is hard because topology is inherently dependent on wiring cost, where cost is defined as the…

Molecular Networks · Quantitative Biology 2015-05-27 Cedric E. Ginestet , Thomas E. Nichols , Ed T. Bullmore , Andrew Simmons

Let $P$ and $S$ be two disjoint sets of $n$ and $m$ points in the plane, respectively. We consider the problem of computing a Steiner tree whose Steiner vertices belong to $S$, in which each point of $P$ is a leaf, and whose longest edge…

Computational Geometry · Computer Science 2013-05-02 Ahmad Biniaz , Anil Maheshwari , Michiel Smid

For successful estimation, the usual network tomography algorithms crucially require i) end-to-end data generated using multicast probe packets, real or emulated, and ii) the network to be a tree rooted at a single sender with destinations…

Networking and Internet Architecture · Computer Science 2012-11-02 Gugan Thoppe

We consider the problem of constructing an an optimal-weight tree from the 3*(n choose 4) weighted quartet topologies on n objects, where optimality means that the summed weight of the embedded quartet topologiesis optimal (so it can be the…

Data Structures and Algorithms · Computer Science 2011-11-09 Rudi Cilibrasi , Paul M. B. Vitanyi

We consider the problems of computing maximal palindromes and distinct palindromes in a trie. A trie is a natural generalization of a string, which can be seen as a single-path tree. There is a linear-time offline algorithm to compute…

Data Structures and Algorithms · Computer Science 2026-01-26 Hiroki Shibata , Mitsuru Funakoshi , Takuya Mieno , Masakazu Ishihata , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

We study the {\em min-cost chain-constrained spanning-tree} (abbreviated \mcst) problem: find a min-cost spanning tree in a graph subject to degree constraints on a nested family of node sets. We devise the {\em first} polytime algorithm…

Data Structures and Algorithms · Computer Science 2016-05-12 Andre Linhares , Chaitanya Swamy

We introduce a cluster evaluation technique called Tree Index. Our Tree Index algorithm aims at describing the structural information of the clustering rather than the quantitative format of cluster-quality indexes (where the representation…

Machine Learning · Computer Science 2020-03-25 A. H. Beg , Md Zahidul Islam , Vladimir Estivill-Castro

We study budget constrained network upgradeable problems. We are given an undirected edge weighted graph $G=(V,E)$ where the weight an edge $e \in E$ can be upgraded for a cost $c(e)$. Given a budget $B$ for improvement, the goal is to find…

Data Structures and Algorithms · Computer Science 2014-12-12 Debjyoti Saharoy , Sandeep Sen

Suppose you are given a graph $G=(V,E)$ with a weight assignment $w:V\rightarrow\mathbb{Z}$ and that your objective is to modify $w$ using legal steps such that all vertices will have the same weight, where in each legal step you are…

Discrete Mathematics · Computer Science 2015-07-03 Friedrich Eisenbrand , Shay Moran , Rom Pinchasi , Martin Skutella

Graphlets of order $k$ in a graph $G$ are connected subgraphs induced by $k$ nodes (called $k$-graphlets) or by $k$ edges (called edge $k$-graphlets). They are among the interesting subgraphs in network analysis to get insights on both the…

Data Structures and Algorithms · Computer Science 2025-05-15 Alessio Conte , Roberto Grossi , Yasuaki Kobayashi , Kazuhiro Kurita , Davide Rucci , Takeaki Uno , Kunihiro Wasa

In this paper, we present a new exact algorithm for counting perfect matchings, which relies on neither inclusion-exclusion principle nor tree-decompositions. For any bipartite graph of $2n$ nodes and $\Delta n$ edges such that $\Delta \geq…

Data Structures and Algorithms · Computer Science 2012-08-14 Taisuke Izumi , Tadashi Wadayama

Finding a maximum-weight matching is a classical and well-studied problem in computer science, solvable in cubic time in general graphs. We consider the specialization called assignment problem where the input is a bipartite graph, and…

Data Structures and Algorithms · Computer Science 2024-10-15 Romaric Duvignau , Noël Gillet , Ralf Klasing

The maximum edge-weight clique problem is to find a clique whose sum of edge-weight is the maximum for a given edge-weighted undirected graph. The problem is NP-hard and some branch-and-bound algorithms have been proposed. In this paper, we…

Data Structures and Algorithms · Computer Science 2018-10-25 Satoshi Shimizu , Kazuaki Yamaguchi , Sumio Masuda

We present an algorithm for classification tasks on big data. Experiments conducted as part of this study indicate that the algorithm can be as accurate as ensemble methods such as random forests or gradient boosted trees. Unlike ensemble…

Machine Learning · Statistics 2017-10-27 Rajiv Sambasivan , Sourish Das

Algorithms are given for determining $L_\infty$ isotonic regression of weighted data. For a linear order, grid in multidimensional space, or tree, of $n$ vertices, optimal algorithms are given, taking $\Theta(n)$ time. These improve upon…

Data Structures and Algorithms · Computer Science 2017-06-26 Quentin F. Stout

Suppose we are given a bipartite graph that admits a perfect matching and an adversary may delete any edge from the graph with the intention of destroying all perfect matchings. We consider the task of adding a minimum cost edge-set to the…

Data Structures and Algorithms · Computer Science 2018-12-06 Felix Hommelsheim , Moritz Mühlenthaler , Oliver Schaudt

A tree-packing is a collection of spanning trees of a graph. It has been a useful tool for computing the minimum cut in static, dynamic, and distributed settings. In particular, [Thorup, Comb. 2007] used them to obtain his dynamic min-cut…

Data Structures and Algorithms · Computer Science 2024-12-05 Tijn de Vos , Aleksander B. G. Christiansen