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Dormancy is an essential strategy for microorganisms to cope with environmental stress. However, global ecosystem models typically ignore microbial dormancy, resulting in major model uncertainties. To facilitate the consideration of…

Quantitative Methods · Quantitative Biology 2014-02-20 Gangsheng Wang , Melanie A. Mayes , Lianhong Gu , Christopher W. Schadt

We evaluate the one-particle and double-occupied Green functions for the Hubbard model at half-filling using the moment approach of Nolting. Our starting point is a self-energy, $\Sigma(\vec{k},\omega)$, which has a single pole,…

Condensed Matter · Physics 2016-08-15 S. Schafroth , J. J. Rodríguez-Núñez

The origin of allometric scaling patterns that are multiples of 1/4 has long fascinated biologists. While not universal, scaling relationships with exponents that are close to multiples of 1/4 are common and have been described in all major…

Quantitative Methods · Quantitative Biology 2015-07-29 Charles A. Price , Paul Drake , Erik J. Veneklaas , Michael Renton

Allometric scaling is one of the most pervasive laws in biology. Its origin, however, is still a matter of dispute. Recent studies have established that maximum metabolic rate scales with an exponent larger than that found for basal…

Biological Physics · Physics 2007-05-23 Lauro A. Barbosa , Guilherme J. M. Garcia , Jafferson K. L. da Silva

Production of energy is a foundation of life. Metabolic rate of organisms (amount of energy produced per unit time) generally increases slower than organisms' mass, which has important implications for life organization. This phenomenon,…

Other Quantitative Biology · Quantitative Biology 2024-10-08 Yuri K. Shestopaloff

Cellular nutrient consumption is influenced by both the nutrient uptake kinetics of an individual cell and the cells' spatial arrangement. Large cell clusters or colonies have inhibited growth at the cluster's center due to the shielding of…

Biological Physics · Physics 2013-06-14 Maxim O. Lavrentovich , John H. Koschwanez , David R. Nelson

Using variational density matrix optimization with two- and three-index conditions we study the one-dimensional Hubbard model with periodic boundary conditions at various filling factors. Special attention is directed to the full…

Strongly Correlated Electrons · Physics 2013-03-04 Brecht Verstichel , Helen van Aggelen , Ward Poelmans , Sebastian Wouters , Dimitri Van Neck

The eco-evolutionary dynamics of species are fundamentally linked to the energetic constraints of its constituent individuals. Of particular importance is the interplay between reproduction and the dynamics of starvation and recovery. To…

Populations and Evolution · Quantitative Biology 2017-11-13 Justin D. Yeakel , Christopher P. Kempes , Sidney Redner

Multicellular systems play a key role in bioprocess and biomedical engineering. Cell ensembles encountered in these setups show phenotypic variability like size and biochemical composition. As this variability may result in undesired…

Systems and Control · Computer Science 2018-07-16 Armin Küper , Robert Dürr , Steffen Waldherr

We develop a semiclassical density functional theory in the context of quantum dots. Coulomb blockade conductance oscillations have been measured in several experiments using nanostructured quantum dots. The statistical properties of these…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 Denis Ullmo , Tatsuro Nagano , Steven Tomsovic , Harold U. Baranger

Concentration of measure has been argued to be the fundamental cause of adversarial vulnerability. Mahloujifar et al. presented an empirical way to measure the concentration of a data distribution using samples, and employed it to find…

Machine Learning · Computer Science 2021-03-25 Jack Prescott , Xiao Zhang , David Evans

I consider how cell shape and environmental geometry affect the rate of nutrient capture and the consequent maximum growth rate of a cell, focusing on rod-like species like \textit{E.\ coli}. Simple modeling immediately implies that it is…

Biological Physics · Physics 2014-03-27 Jonathan Landy

Scaling laws illuminate Nature's fundamental biological principles and guide bioinspired materials and structural designs. In simple cases they are based on the fundamental principle that all laws of nature remain unchanged (i.e.,…

Biological Physics · Physics 2025-02-18 Huan Liu , Shashank Priya , Richard D. James

Tree-size distribution is one of the most investigated subjects in plant population biology. The forestry literature reports that tree-size distribution trajectories vary across different stands and/or species, while the metabolic scaling…

Populations and Evolution · Quantitative Biology 2012-12-04 Tommaso Anfodillo , Marco Carrer , Filippo Simini , Ionel Popa , Jayanth R. Banavar , Amos Maritan

Current questions in ecology revolve around instabilities in the dynamics on spatial networks and particularly the effect of node heterogeneity. We extend the Master Stability Function formalism to inhomogeneous biregular networks having…

Populations and Evolution · Quantitative Biology 2022-04-27 Alexander Krauß , Thilo Gross , Barbara Drossel

Vegetation in semi-arid environments self-organizes into striking spatial patterns -- bands, spots, labyrinths, and gaps -- with characteristic wavelengths on the order of tens to hundreds of meters. Existing reaction-diffusion models…

Pattern Formation and Solitons · Physics 2026-04-06 Chad M. Topaz

In this work we consider a size-structured cannibalism model with the model ingredients (fertility, growth, and mortality rate) depending on size (ranging over an infinite domain) and on a general function of the standing population…

Analysis of PDEs · Mathematics 2019-03-25 Jozsef Z. Farkas , Thomas C. Hagen

Purpose: Our objective is to apply an improved statistical global model of beta^- decay half-life systematics [1] generated by machine-learning techniques to the prediction of beta half-lives relevant to r-process nuclei. The primary aim of…

Nuclear Theory · Physics 2013-09-04 N. J. Costiris , E. Mavrommatis , K. A. Gernoth , J. W. Clark

A striking feature of the marine ecosystem is the regularity in its size spectrum: the abundance of organisms as a function of their weight approximately follows a power law over almost ten orders of magnitude. We interpret this as evidence…

Populations and Evolution · Quantitative Biology 2010-09-17 Jose A. Capitan , Gustav W. Delius

Microbiome research has immense potential for unlocking insights into human health and disease. A common goal in human microbiome research is identifying subgroups of individuals with similar microbial composition that may be linked to…

Methodology · Statistics 2025-08-21 Suppapat Korsurat , Matthew D. Koslovsky