Related papers: Easy identification of generalized common and cons…
The paper describes an algorithm to compute a consensus sequence from a set of DNA sequences of approximatively identical length generated by 3rd sequencing generation technologies. Its purpose targets DNA storage and is guided by specific…
Clustering is a fundamental problem in unsupervised machine learning with many applications in data analysis. Popular clustering algorithms such as Lloyd's algorithm and $k$-means++ can take $\Omega(ndk)$ time when clustering $n$ points in…
This note introduces a novel clustering preserving transformation of cluster sets obtained from $k$-means algorithm. This transformation may be used to generate new labeled data{}sets from existent ones. It is more flexible that Kleinberg…
Given two sets of points $A$ and $B$ in a normed plane, we prove that there are two linearly separable sets $A'$ and $B'$ such that $\mathrm{diam}(A')\leq \mathrm{diam}(A)$, $\mathrm{diam}(B')\leq \mathrm{diam}(B)$, and $A'\cup B'=A\cup B.$…
We introduce $k$-variance, a generalization of variance built on the machinery of random bipartite matchings. $K$-variance measures the expected cost of matching two sets of $k$ samples from a distribution to each other, capturing local…
Utilizing the sample size of a dataset, the random cluster model is employed in order to derive an estimate of the mean number of K-Means clusters to form during classification of a dataset.
Supervised classification can be effective for prediction but sometimes weak on interpretability or explainability (XAI). Clustering, on the other hand, tends to isolate categories or profiles that can be meaningful but there is no…
In ongoing work to define a principled method for syntenic block discovery and structuring, work based on homology-derived constraints and a generalization of common intervals, we faced a fundamental computational problem: how to determine…
In this paper, the decades-old clustering method k-means is revisited. The original distortion minimization model of k-means is addressed by a pure stochastic minimization procedure. In each step of the iteration, one sample is tentatively…
Kernel-based K-means clustering has gained popularity due to its simplicity and the power of its implicit non-linear representation of the data. A dominant concern is the memory requirement since memory scales as the square of the number of…
Here, we propose a clustering technique for general clustering problems including those that have non-convex clusters. For a given desired number of clusters $K$, we use three stages to find a clustering. The first stage uses a hybrid…
In this paper, a novel feature selection approach for supervised interval valued features is proposed. The proposed approach takes care of selecting the class specific features through interval K-Means clustering. The kernel of K-Means…
We present a $k$-means-based clustering algorithm, which optimizes the mean square error, for given cluster sizes. A straightforward application is balanced clustering, where the sizes of each cluster are equal. In the $k$-means assignment…
We consider $K$-means clustering in networked environments (e.g., internet of things (IoT) and sensor networks) where data is inherently distributed across nodes and processing power at each node may be limited. We consider a clustering…
We review clustering as an analysis tool and the underlying concepts from an introductory perspective. What is clustering and how can clusterings be realised programmatically? How can data be represented and prepared for a clustering task?…
In $K$-means classification, a set of data will form clusters, i.e. classes, if the measured distances between data points (or some common point in each class) are below a certain threshold. With the assumption that the data points are…
A permutation is called {\it {block-wise simple}} if it contains no interval of the form $p_1\oplus p_2$ or $p_1 \ominus p_2$. We present this new set of permutations and explore some of its combinatorial properties. We present a generating…
The interval poset of a permutation catalogues the intervals that appear in its one-line notation, according to set inclusion. We study this poset, describing its structural, characterizing, and enumerative properties.
The $K$-means algorithm is extended to allow for partitioning of skewed groups. Our algorithm is called TiK-Means and contributes a $K$-means type algorithm that assigns observations to groups while estimating their skewness-transformation…
A new cluster analysis method, $K$-quantiles clustering, is introduced. $K$-quantiles clustering can be computed by a simple greedy algorithm in the style of the classical Lloyd's algorithm for $K$-means. It can be applied to large and…