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We introduce simple models of genetic regulatory networks and we proceed to the mathematical analysis of their dynamics. The models are discrete time dynamical systems generated by piecewise affine contracting mappings whose variables…

Dynamical Systems · Mathematics 2007-05-23 Ricardo Coutinho , Bastien Fernandez , Ricardo Lima , Arnaud Meyroneinc

Critical points separate distinct dynamical regimes of complex systems, often delimiting functional or macroscopic phases in which the system operates. However, the long-term prediction of critical regimes and behaviors is challenging given…

Physics and Society · Physics 2025-04-15 Xiangrong Wang , Dan Lu , Zongze Wu , Weina Xu , Hongru Hou , Yanqing Hu , Yamir Moreno

We describe a simple adaptive network of coupled chaotic maps. The network reaches a stationary state (frozen topology) for all values of the coupling parameter, although the dynamics of the maps at the nodes of the network can be…

Adaptation and Self-Organizing Systems · Physics 2015-06-19 V. Botella-Soler , P. Glendinning

It is a fundamental challenge to understand how the function of a network is related to its structural organization. Adaptive dynamical networks represent a broad class of systems that can change their connectivity over time depending on…

Adaptation and Self-Organizing Systems · Physics 2023-04-13 Rico Berner , Thilo Gross , Christian Kuehn , Jürgen Kurths , Serhiy Yanchuk

People organize in groups and contagions spread across them. A simple stochastic process, yet complex to model due to dynamical correlations within and between groups. Moreover, groups can evolve if agents join or leave in response to…

Physics and Society · Physics 2025-05-22 Giulio Burgio , Guillaume St-Onge , Laurent Hébert-Dufresne

In many complex systems, states and interaction structure coevolve towards a dynamic equilibrium. For the adaptive contact process, we obtain approximate expressions for the degree distributions that characterize the interaction network in…

Adaptation and Self-Organizing Systems · Physics 2015-07-01 Stefan Wieland , Ana Nunes

Real-world network systems are inherently dynamic, with network topologies undergoing continuous changes over time. Previous works often focus on static networks or rely on complete prior knowledge of evolving topologies, whereas real-world…

Systems and Control · Electrical Eng. & Systems 2025-09-03 Chunyu Pan , Xizhe Zhang , Haoyu Zheng , Zhao Su , Changsheng Zhang , Weixiong Zhang

There has been a long debate on how new levels of organization have evolved. It might seem unlikely, as cooperation must prevail over competition. One well-studied example is the emergence of autocatalytic sets, which seem to be a…

Populations and Evolution · Quantitative Biology 2026-02-16 Sean P. Maley , Carlos Gershenson , Stuart A. Kauffman

Attractor neural networks consider that neural information is stored as stationary states of a dynamical system formed by a large number of interconnected neurons. The attractor property empowers a neural system to encode information…

Neurons and Cognition · Quantitative Biology 2024-10-10 Yujun Li , Tianhao Chu , Si Wu

Discrete dynamical systems in which model components take on categorical values have been successfully applied to biological networks to study their global dynamic behavior. Boolean models in particular have been used extensively. However,…

Quantitative Methods · Quantitative Biology 2021-09-09 Etan Basser-Ravitz , Arman Darbar , Julia Chifman

Problems with artificial neural networks originate from their deterministic nature and inevitable prior learnings, resulting in inadequate adaptability against unpredictable, abrupt environmental change. Here we show that a stochastically…

Disordered Systems and Neural Networks · Physics 2009-11-13 Naoki Asakawa , Yasushi Hotta , Teruo Kanki , Hitoshi Tabata , Tomoji Kawai

We demonstrate a data-driven technique for adaptive control in dynamical systems that exploits the reservoir computing method. We show that a reservoir computer can be trained to predict a system parameter from the time series data.…

The dynamics of a linear dynamical system over a finite field can be described by using the elementary divisors of the corresponding matrix. It is natural to extend the investigation to a general finite commutative ring. In a previous…

Rings and Algebras · Mathematics 2017-09-26 Yangjiang Wei , Guangwu Xu , Yi Ming Zou

This paper addresses the problem of finding cycles in the state transition graphs of synchronous Boolean networks. Synchronous Boolean networks are a class of deterministic finite state machines which are used for the modeling of gene…

Molecular Networks · Quantitative Biology 2009-01-29 Elena Dubrova , Maxim Teslenko

Limit theorems for a linear dynamical system with random interactions are established. These theorems enable us to characterize the dynamics of a large complex system in details and assess whether a large complex system is stable or…

Mathematical Physics · Physics 2011-11-10 J. F. Feng , M. Shcherbina , B. Tirozzi

Adaptivity is a dynamical feature that is omnipresent in nature, socio-economics, and technology. For example, adaptive couplings appear in various real-world systems like the power grid, social, and neural networks, and they form the…

We study the computational problem of rigorously describing the asymptotic behaviour of topological dynamical systems up to a finite but arbitrarily small pre-specified error. More precisely, we consider the limit set of a typical orbit,…

Dynamical Systems · Mathematics 2024-06-18 Cristobal Rojas , Mathieu Sablik

In this paper, we will study the statistical behaviors of orbits. Firstly, we will show that for a dynamical systems have the shadowing property or almost specification property, the set of nonrecurrent points has full topological entropy.…

Dynamical Systems · Mathematics 2025-01-22 Yiwei Dong , Xiaobo Hou , Wanshan Lin , Xueting Tian

The relationship between the properties of a dynamical system and the structure of its defining equations has long been studied in many contexts. Here we study this problem for the class of conjunctive (resp. disjunctive) Boolean networks,…

Combinatorics · Mathematics 2008-05-13 Abdul Salam Jarrah , Reinhard Laubenbacher , Alan Veliz-Cuba

We study discrete time linear constrained switching systems with additive disturbances, in which the switching may be on the system matrices, the disturbance sets, the state constraint sets or a combination of the above. In our general…

Systems and Control · Computer Science 2017-02-03 Nikolaos Athanasopoulos , Konstantinos Smpoukis , Raphael M. Jungers