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We observe that certain large-clique graph triangulations can be useful to reduce both computational and space requirements when making queries on mixed stochastic/deterministic graphical models. We demonstrate that many of these…
This paper presents the novel `uniqueness tree' algorithm, as one possible method for determining whether two finite, undirected graphs are isomorphic. We prove that the algorithm has polynomial time complexity in the worst case, and that…
We introduce a new notation for representing labeled regular bipartite graphs of arbitrary degree. Several enumeration problems for labeled and unlabeled regular bipartite graphs have been introduced. A general algorithm for enumerating all…
We describe the conditions under which a set of continuous variables or characters can be described as an X-tree or a split network. A distance matrix corresponds exactly to a split network or a valued X-tree if, after ordering of the taxa,…
A tessellation of a graph is a partition of its vertices into vertex disjoint cliques. A tessellation cover of a graph is a set of tessellations that covers all of its edges. The $t$-tessellability problem aims to decide whether there is a…
We study when a given edge of a factor-critical graph is contained in a matching avoiding exactly one, pregiven vertex of the graph. We then apply the results to always partition the vertex-set of a $3$-regular, $3$-uniform hypergraph into…
We introduce series-triangular graph embeddings and show how to partition point sets with them. This result is then used to improve the upper bound on the number of Steiner points needed to obtain compatible triangulations of point sets.…
We study the imbalance problem on complete bipartite graphs. The imbalance problem is a graph layout problem and is known to be NP-complete. Graph layout problems find their applications in the optimization of networks for parallel computer…
In this paper, we present new efficiently solvable cases of the Minimum Uncovering Branching problem, an optimization problem with applications in cancer genomics introduced by Hujdurovi\'c, Husi\'c, Milani\v{c}, Rizzi, and Tomescu in 2018.…
We characterize clique trees of a chordal graph in their relation to simplicial vertices and perfect sequences of maximal cliques. We investigate boundary cliques defined by Shibata and clarify their relation to endpoints of clique trees.…
Pairwise compatibility graphs (PCGs) with non-negative integer edge weights recently have been used to describe rare evolutionary events and scenarios with horizontal gene transfer. Here we consider the case that vertices are separated by…
The restricted hypercube-like graphs, variants of the hypercube, were proposed as desired interconnection networks of parallel systems. The matching preclusion number of a graph is the minimum number of edges whose deletion results in the…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
A graph covering projection, also referred to as a locally bijective homomorphism, is a mapping between the vertices and edges of two graphs that preserves incidences and is a local bijection. This concept originates in topological graph…
Deciding whether a graph can be embedded in a grid using only unit-length edges is NP-complete, even when restricted to binary trees. However, it is not difficult to devise a number of graph classes for which the problem is polynomial, even…
The defect morphology is an essential aspect of the evolution of crystals' microstructure and its response to stress. Existing methods either only report defect concentration or characterize only some of the defect morphologies. The need…
Graph matching is an important and persistent problem in computer vision and pattern recognition for finding node-to-node correspondence between graph-structured data. However, as widely used, graph matching that incorporates pairwise…
We study the class of 1-perfectly orientable graphs, that is, graphs having an orientation in which every out-neighborhood induces a tournament. 1-perfectly orientable graphs form a common generalization of chordal graphs and circular arc…
Let $G$ be a complete graph with $n+1$ vertices. In a recent paper of the authors, it is shown that the path trees of the graph play a special role in the structure of the truncated powers and partition functions that are associated with…
For distinct vertices $u,v$ in a graph $G$, let $\kappa_G(u,v)$ denote the maximum number of internally disjoint $u$-$v$ paths in $G$. Then, $\kappa_G(u,v) \leq \min\{ \mbox{deg}_G(u), \mbox{deg}_G(v) \}$. If equality is attained for every…