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Reconstructing the equation of motion and thus the network topology of a system from time series is a very important problem. Although many powerful methods have been developed, it remains a great challenge to deal with systems in high…

Adaptation and Self-Organizing Systems · Physics 2023-08-16 Zishuo Yan , Lili Gui , Kun Xu , Yueheng Lan

Lying at the interface between Network Science and Machine Learning, node embedding algorithms take a graph as input and encode its structure onto output vectors that represent nodes in an abstract geometric space, enabling various…

Physics and Society · Physics 2025-10-03 Riccardo Milocco , Fabian Jansen , Diego Garlaschelli

The efficiency of graph-based semi-supervised algorithms depends on the graph of instances on which they are applied. The instances are often in a vectorial form before a graph linking them is built. The construction of the graph relies on…

Machine Learning · Computer Science 2016-02-19 Pauline Wauquier , Mikaela Keller

Graphs are a representation of structured data that captures the relationships between sets of objects. With the ubiquity of available network data, there is increasing industrial and academic need to quickly analyze graphs with billions of…

Machine Learning · Computer Science 2023-07-28 Brandon Mayer , Anton Tsitsulin , Hendrik Fichtenberger , Jonathan Halcrow , Bryan Perozzi

Orthogonal drawings, i.e., embeddings of graphs into grids, are a classic topic in Graph Drawing. Often the goal is to find a drawing that minimizes the number of bends on the edges. A key ingredient for bend minimization algorithms is the…

Computational Geometry · Computer Science 2021-06-11 Lukas Barth , Benjamin Niedermann , Ignaz Rutter , Matthias Wolf

A visualized graph is a powerful tool for data analysis and synthesis tasks. In this case, the task of visualization constitutes not only in displaying vertices and edges according to the graph representation, but also in ensuring that the…

Combinatorics · Mathematics 2024-08-01 Sergey Kurapov , Maxim Davidovsky

Metric graphs are meaningful objects for modeling complex structures that arise in many real-world applications, such as road networks, river systems, earthquake faults, blood vessels, and filamentary structures in galaxies. To study metric…

Algebraic Topology · Mathematics 2018-12-14 Ellen Gasparovic , Maria Gommel , Emilie Purvine , Radmila Sazdanovic , Bei Wang , Yusu Wang , Lori Ziegelmeier

This paper studies the problem of estimation from relative measurements in a graph, in which a vector indexed over the nodes has to be reconstructed from pairwise measurements of differences between its components associated to nodes…

Systems and Control · Computer Science 2018-07-27 Chiara Ravazzi , Nelson P. K. Chan , Paolo Frasca

Graphs are used in almost every scientific discipline to express relations among a set of objects. Algorithms that compare graphs, and output a closeness score, or a correspondence among their nodes, are thus extremely important. Despite…

Discrete Mathematics · Computer Science 2020-11-17 Sam Safavi , José Bento

Streets networks provide an invaluable source of information about the different temporal and spatial patterns emerging in our cities. These streets are often represented as graphs where intersections are modelled as nodes and streets as…

Machine Learning · Statistics 2022-11-10 Mateo Neira , Roberto Murcio

Metric dimension is a graph parameter that has been applied to robot navigation and finding low-dimensional vector embeddings. Throttling entails minimizing the sum of two available resources when solving certain graph problems. In this…

Combinatorics · Mathematics 2025-10-02 Boris Brimkov , Peter Diao , Jesse Geneson , Carolyn Reinhart , Shen-Fu Tsai , William Wang , Kyle Worley

We propose a novel node embedding of directed graphs to statistical manifolds, which is based on a global minimization of pairwise relative entropy and graph geodesics in a non-linear way. Each node is encoded with a probability density…

Machine Learning · Computer Science 2020-02-07 Thorben Funke , Tian Guo , Alen Lancic , Nino Antulov-Fantulin

A recurrent neural network (RNN) is a universal approximator of dynamical systems, whose performance often depends on sensitive hyperparameters. Tuning of such hyperparameters may be difficult and, typically, based on a trial-and-error…

Neural and Evolutionary Computing · Computer Science 2017-02-22 Filippo Maria Bianchi , Lorenzo Livi , Cesare Alippi , Robert Jenssen

Persistent homology is a tool that can be employed to summarize the shape of data by quantifying homological features. When the data is an object in $\mathbb{R}^d$, the (augmented) persistent homology transform ((A)PHT) is a family of…

Computational Geometry · Computer Science 2022-12-27 Brittany Terese Fasy , Samuel Micka , David L. Millman , Anna Schenfisch , Lucia Williams

The number of embeddings of minimally rigid graphs in $\mathbb{R}^D$ is (by definition) finite, modulo rigid transformations, for every generic choice of edge lengths. Even though various approaches have been proposed to compute it, the gap…

Algebraic Geometry · Mathematics 2020-01-24 Evangelos Bartzos , Ioannis Emiris , Jan Legerský , Elias Tsigaridas

The inverse problem of electrical impedance tomography is severely ill-posed, meaning that, only limited information about the conductivity can in practice be recovered from boundary measurements of electric current and voltage. Recently it…

Analysis of PDEs · Mathematics 2018-09-20 Henrik Garde , Stratos Staboulis

Graph structure learning aims to learn connectivity in a graph from data. It is particularly important for many computer vision related tasks since no explicit graph structure is available for images for most cases. A natural way to…

Computer Vision and Pattern Recognition · Computer Science 2022-12-26 Yaohua Wang , FangYi Zhang , Ming Lin , Senzhang Wang , Xiuyu Sun , Rong Jin

The success of graph embeddings or node representation learning in a variety of downstream tasks, such as node classification, link prediction, and recommendation systems, has led to their popularity in recent years. Representation learning…

Machine Learning · Computer Science 2018-09-07 Saba A. Al-Sayouri , Danai Koutra , Evangelos E. Papalexakis , Sarah S. Lam

A natural representation of random graphs is the random measure. The collection of product random measures, their transformations, and non-negative test functions forms a general representation of the collection of non-negative weighted…

Probability · Mathematics 2022-04-21 Caleb Bastian , Herschel Rabitz

We introduce the first graph kernels for metric graphs via tropical algebraic geometry. In contrast to conventional graph kernels based on graph combinatorics such as nodes, edges, and subgraphs, our metric graph kernels are purely based on…

Machine Learning · Computer Science 2026-01-30 Yueqi Cao , Anthea Monod
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