Related papers: Minimum Common String Partition Parameterized by P…
String matching is the problem of finding all the substrings of a text which match a given pattern. It is one of the most investigated problems in computer science, mainly due to its very diverse applications in several fields. Recently,…
We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…
Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…
Finding the smallest $d$-chain with a specific $(d-1)$-boundary in a simplicial complex is known as the \textsc{Minimum Bounded Chain} (MBC$_d$) problem. The MBC$_d$ problem is NP-hard for all $d\geq 2$. In this paper, we prove that it is…
Two strings are considered to have parameterized matching when there exists a bijection of the parameterized alphabet onto itself such that it transforms one string to another. Parameterized matching has application in software duplication…
The problem of partitioning a large and sparse tensor is considered, where the tensor consists of a sequence of adjacency matrices. Theory is developed that is a generalization of spectral graph partitioning. A best rank-$(2,2,\lambda)$…
Unrefinable partitions are a subset of partitions into distinct parts which satisfy an additional unrefinability property. More precisely, being an unrefinable partition means that none of the parts can be written as the sum of smaller…
The Minimum Consistent Subset (MCS) problem arises naturally in the context of supervised clustering and instance selection. In supervised clustering, one aims to infer a meaningful partitioning of data using a small labeled subset.…
In this paper we investigate the problem of partitioning an input string T in such a way that compressing individually its parts via a base-compressor C gets a compressed output that is shorter than applying C over the entire T at once.…
The submodular partitioning problem asks to minimize, over all partitions $P$ of a ground set $V$, the sum of a given submodular function $f$ over the parts of $P$. The problem has seen considerable work in approximability, as it…
The minimum clique partition (MCP) problem is that of partitioning the vertex set of a given graph into a minimum number of cliques. Given $n$ points in the plane, the corresponding unit disk graph (UDG) has these points as vertices, and…
Given a simple undirected graph $G=(V,E)$ and a partition of the vertex set $V$ into $p$ parts, the \textsc{Partition Coloring Problem} asks if we can select one vertex from each part of the partition such that the chromatic number of the…
Partitioning a graph into blocks of roughly equal weight while cutting only few edges is a fundamental problem in computer science with numerous practical applications. While shared-memory parallel partitioners have recently matured to…
The problem of multiway partitioning of an undirected graph is considered. A spectral method is used, where the k > 2 largest eigenvalues of the normalized adjacency matrix (equivalently, the k smallest eigenvalues of the normalized graph…
We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…
Our research deals with the optimization version of the set partition problem, where the objective is to minimize the absolute difference between the sums of the two disjoint partitions. Although this problem is known to be NP-hard and…
In ongoing work to define a principled method for syntenic block discovery and structuring, work based on homology-derived constraints and a generalization of common intervals, we faced a fundamental computational problem: how to determine…
Given a sequence of $N$ positive real numbers $\{a_1,a_2,..., a_N \}$, the number partitioning problem consists of partitioning them into two sets such that the absolute value of the difference of the sums of $a_j$ over the two sets is…
Given a string $w$ over a finite alphabet $\Sigma$ and an integer $K$, can $w$ be partitioned into strings of length at most $K$, such that there are no \emph{collisions}? We refer to this question as the \emph{string partition} problem and…
In the Integer Quadratic Programming problem input is an n*n integer matrix Q, an m*n integer matrix A and an m-dimensional integer vector b. The task is to find a vector x in Z^n, minimizing x^TQx, subject to Ax <= b. We give a fixed…