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Biomolecular logic systems processing biochemical input signals and producing "digital" outputs in the form of YES/NO were developed for analysis of physiological conditions characteristic of liver injury, soft tissue injury and abdominal…

Soft Condensed Matter · Physics 2011-11-28 Jan Halamek , Jian Zhou , Lenka Halamkova , Vera Bocharova , Vladimir Privman , Joseph Wang , Evgeny Katz

We report the first realization of a biomolecular AND gate function with double-sigmoid response (sigmoid in both inputs). Two enzyme biomarker inputs activate the gate output signal which can then be used as indicating liver injury, but…

Molecular Networks · Quantitative Biology 2013-04-16 Jan Halamek , Oleksandr Zavalov , Lenka Halamkova , Sevim Korkmaz , Vladimir Privman , Evgeny Katz

We review enzymatic systems which involve biocatalytic reactions utilized for information processing (biocomputing). Extensive ongoing research in biocomputing, mimicking Boolean logic gates has been motivated by potential applications in…

Biological Physics · Physics 2010-10-12 Evgeny Katz , Vladimir Privman

Porous ceramic microspheres are a desirable substance for bone tissue reconstruction and delivery applications. This study focuses on Mg-Ca silicate microspheres encapsulated in biodegradable poly (lactic-co-glycolic acid) (PLGA) to serve…

Medical Physics · Physics 2025-12-24 N. Zirak , A. Maadani , E. Salahinejad , N. Abbasnezhad , M. Shirinbayan

Trans-activating transcriptional activator (TAT), a cell-penetrating peptide, has been extensively used for facilitating cellular uptake and nuclear targeting of drug delivery systems. However, the positively charged TAT peptide usually…

Tissues and Organs · Quantitative Biology 2024-07-31 Xing Guo , Lin Wang , Kayla Duval , Jing Fan , Shaobing Zhou , Zi Chen

Currently, many studies of Alzheimer's disease (AD) are investigating the neurobiological factors behind the acquisition of beta-amyloid (A), pathologic tau (T), and neurodegeneration ([N]) biomarkers from neuroimages. However, a…

Neurons and Cognition · Quantitative Biology 2020-10-05 Jingwen Zhang , Defu Yang , Wei He , Guorong Wu , Minghan Chen

We develop an approach aimed at optimizing the parameters of a network of biochemical logic gates for reduction of the "analog" noise buildup. Experiments for three coupled enzymatic AND gates are reported, illustrating our procedure.…

Molecular Networks · Quantitative Biology 2010-10-12 Vladimir Privman , Mary A. Arugula , Jan Halamek , Marcos Pita , Evgeny Katz

A dielectric-modulated double gate bilayer electrodes organic thin-film transistor (DMDGBE-OTFT) based sensor is proposed for label-free biomolecule detection. The double gate of DMDGBE-OTFT is used for creating two symmetrical gates…

Instrumentation and Detectors · Physics 2022-05-31 Sushil Kumar Jain , Amit M. Joshi

Calcein leakage assays are a standard experimental set-up for probing the extent of damage induced by external agents on synthetic lipid vesicles. The fluorescence signal associated with calcein release from liposomes is the signature of…

Computational Physics · Physics 2019-01-11 Sebastian Salassi , Federica Simonelli , Alessio Bartocci , Giulia Rossi

A severe application of stress on articular cartilage can initiate a cascade of biochemical reactions that can lead to the development of osteoarthritis. We constructed a multiscale mathematical model of the process with three components:…

Tissues and Organs · Quantitative Biology 2023-02-14 Georgi I. Kapitanov , Xiayi Wang , Bruce P. Ayati , Marc J. Brouillette , James A. Martin

We report a realization of an associative memory signal/information processing system based on simple enzyme-catalyzed biochemical reactions. Optically detected chemical output is always obtained in response to the triggering input, but the…

Molecular Networks · Quantitative Biology 2013-04-23 Vera Bocharova , Kevin MacVittie , Soujanya Chinnapareddy , Jan Halamek , Vladimir Privman , Evgeny Katz

We developed and experimentally verified an analytical model to describe diffusion of oligonucleotides from stable hydrogel beads. The synthesized alginate beads are Fe3+-cross-linked as well as polyelectrolyte-doped for uniformity and…

Soft Condensed Matter · Physics 2016-06-07 Vladimir Privman , Sergii Domanskyi , Roberto A. S. Luz , Nataliia Guz , M. Lawrence Glasser , Evgeny Katz

The prompt identification of pancreatic cancer symptoms is an ongoing clinical challenge, often leading to late diagnosis and poor prognosis. Tumor 'hijacking' of the pancreatic stromal structure limits the uptake of systemic…

Diffusing alpha-emitters Radiation Therapy (Alpha DaRT) enables the use of alpha particles for the treatment of solid tumors. It employs interstitial sources carrying a few uCi of Ra-224, designed to release its short-lived progeny, which…

Medical Physics · Physics 2023-11-16 Lior Epstein , Guy Heger , Arindam Roy , Israel Gannot , Itzhak Kelson , Lior Arazi

Bioceramic porous microspheres are promising substances for dental and orthopedic bone void filling, tissue engineering and drug delivery applications. In this research, the structure and cytocompatibility of bioactive magnesium-calcium…

Biological Physics · Physics 2026-04-21 A. Bolandparvaz Jahromi , E. Salahinejad

We report the first systematic study of designed two-input biochemical systems as information processing gates with favorable noise-transmission properties accomplished by modifying the gate's response from convex shape to sigmoid in both…

Biological Physics · Physics 2013-11-05 Saira Bakshi , Oleksandr Zavalov , Jan Halamek , Vladimir Privman , Evgeny Katz

Droplet formation in oiling-out crystallization has important implication for separation and purification of pharmaceutical active ingredients by using an antisolvent. In this work, we report the crystallization processes of oiling-out…

Soft Condensed Matter · Physics 2020-09-14 Xuehua Zhang , Zixiang Wei , Howon Choi , Hao Hao , Huaiyu Yang

Recent advances in biochemical computing, i.e., information processing with cascades of primarily enzymatic reactions realizing computing gates, such as AND, OR, etc., as well as progress in networking these gates and coupling of the…

Biological Physics · Physics 2010-10-12 Vladimir Privman , Evgeny Katz , Joseph Wang

Although polymers are widely used in laser-irradiation research, their microscopic response to high-intensity ultrafast XUV or X-ray irradiation is still largely unknown. Here we comparatively study homologous series of alkenes. XTANT-3…

Materials Science · Physics 2025-04-17 N. Nikishev , N. Medvedev

Reactive, semi-permeable interfaces play important roles in key biological processes such as targeted drug delivery, lipid metabolism, and signal transduction. These systems involve coupled surface reactions, transmembrane transport, and…

Numerical Analysis · Mathematics 2025-07-22 Weidong Shi , Shixin Xu , Zhen Zhang , Quan Zhao
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