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We view the folding of RNA-sequences as a map that assigns a pattern of base pairings to each sequence, known as secondary structure. These preimages can be constructed as random graphs (i.e. the neutral networks associated to the structure…
We describe rational knots with any of the possible combinations of the properties (a)chirality, (non-)positivity, (non-)fiberedness, and unknotting number one (or higher), and determine exactly their number for a given number of crossings…
Traditionally, alternating links are studied with alternating diagrams on $S^2$ in $S^3$. In this paper, we consider links which are alternating on higher genus surfaces $S_g$ in $S_g \times I$. We define what it means for such a link to be…
Given a generic rational curve $C$ in the group of Euclidean displacements we construct a linkage such that the constrained motion of one of the links is exactly $C$. Our construction is based on the factorization of polynomials over dual…
It has been argued by Thom and Palm that sparsely-connected neural networks (SCNs) show improved performance over fully-connected networks (FCNs). Super-regular networks (SRNs) are neural networks composed of a set of stacked sparse layers…
Suppose a set of prototiles allows $N$ different substitution rules. In this paper we study tilings of $\mathbb{R}^d$ constructed from random application of the substitution rules. The space of all possible tilings obtained from all…
We study graphs that are formed by independently-positioned needles (i.e., line segments) in the unit square. To mathematically characterize the graph structure, we derive the probability that two line segments intersect and determine…
The notion of a pseudoknot is defined as an equivalence class of knot diagrams that may be missing some crossing information. We provide here a topological invariant schema for pseudoknots and their relatives, 4-valent rigid vertex spatial…
Recently Iltgen, Lewark and Marino introduced the concept of a proper rational tangle replacement and the corresponding notion of the proper rational unknotting number. In this note we derive a version of the Montesinos trick for proper…
We show that a rational normal scroll can in general be set-theoretically defined by a proper subset of the 2-minors of the associated two-row matrix. This allows us to find a class of rational normal scrolls that are almost set-theoretic…
Regularization can mitigate the generalization gap between training and inference by introducing inductive bias. Existing works have already proposed various inductive biases from diverse perspectives. However, none of them explores…
This paper gives infinitely many examples of unknot diagrams that are hard, in the sense that the diagrams need to be made more complicated by Reidemeister moves before they can be simplified. In order to construct these diagrams, we prove…
This paper investigates the connection between neural networks and sufficient dimension reduction (SDR), demonstrating that neural networks inherently perform SDR in regression tasks under appropriate rank regularizations. Specifically, the…
This paper explores the problem of tool substitution, namely, identifying substitute tools for performing a task from a given set of candidate tools. We introduce a novel approach to tool substitution, that unlike prior work in the area,…
We present new Recurrent Neural Network (RNN) cells for image classification using a Neural Architecture Search (NAS) approach called DARTS. We are interested in the ReNet architecture, which is a RNN based approach presented as an…
A double cover $Y$ of $\mathbb{P}^1 \times \mathbb{P}^2$ ramified over a general $(2,2)$-divisor will have the structure of a geometrically standard conic bundle ramified over a smooth plane quartic $\Delta \subset \mathbb{P}^2$ via the…
We study $N$-point rational distance sets ($\textrm{RDS}(N)$) on the parabola $y=x^2$. Previous approaches to the problem include efforts made using elliptic curves and diophantine chains, with successful analysis for $N\leq 4$. We extend…
Divide knots and links, defined by A'Campo in the singularity theory of complex curves, is a method to present knots or links by real plane curves. The present paper is a continuation of the author's previous result that every knot in the…
Standard statistical techniques often require transforming data to have mean $0$ and standard deviation $1$. Typically, this process of "standardization" or "normalization" is applied across subjects when each subject produces a single…
Final revision. To appear in the Journal of Differential Geometry. This paper studies knots that are transversal to the standard contact structure in $\reals^3$, bringing techniques from topological knot theory to bear on their transversal…