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Given the inner complexity of the human nervous system, insight into the dynamics of brain activity can be gained from understanding smaller and simpler organisms, such as the nematode C. Elegans. The behavioural and structural biology of…

Neurons and Cognition · Quantitative Biology 2021-07-15 Gonçalo Mestre , Ruxandra Barbulescu , Arlindo L. Oliveira , L. Miguel Silveira

Many real-world complex networks arise as a result of a competition between growth and rewiring processes. Usually the initial part of the evolution is dominated by growth while the later one rather by rewiring. The initial growth allows…

Statistical Mechanics · Physics 2020-10-07 Zdzislaw Burda , Michalina Kotwica , Krzysztof Malarz

Neural systems show a modular and typically also a hierarchical organisation across different levels and across different species. Topology relates to function, but it is also influences dynamics as earlier studies showed its effect on…

Neurons and Cognition · Quantitative Biology 2014-05-15 Marcus Kaiser

It is widely believed that the formation of brain network structure is under the pressure of optimal trade-off between reducing wiring cost and promoting communication efficiency. However, the question of whether this trade-off exists in…

Neurons and Cognition · Quantitative Biology 2020-12-10 Junji Ma , Jinbo Zhang , Ying Lin , Zhengjia Dai

We analyse the neural dynamics and its relation with the emergent behaviour of a robotic vehicle that is controlled by a neural network numerical simulation based on the nervous system of the nematode Caenorhabditis elegans. The robot…

Neurons and Cognition · Quantitative Biology 2020-11-19 Carlos E. Valencia Urbina , Sergio A. Cannas , Pablo M. Gleiser

Evolving Neural Networks (NNs) has recently seen an increasing interest as an alternative path that might be more successful. It has many advantages compared to other approaches, such as learning the architecture of the NNs. However, the…

Neural and Evolutionary Computing · Computer Science 2022-03-15 Abdullah Khalili , Abdelhamid Bouchachia

C. elegans locomotion is composed of switches between forward and reversal states punctuated by turns. This locomotory capability is necessary for the nematode to move towards attractive stimuli, escape noxious chemicals, and explore its…

Neurons and Cognition · Quantitative Biology 2025-01-03 Megan Morrison , Lai-Sang Young

Recent whole-brain calcium imaging recordings of the nematode C. elegans have demonstrated that neural activity is dominated by dynamics on a low-dimensional manifold that can be clustered according to behavioral states. Despite progress in…

Neurons and Cognition · Quantitative Biology 2020-02-05 Megan Morrison , Charles Fieseler , J. Nathan Kutz

Spatial relations between neurons in the network with time delays play a crucial role in determining dynamics of the system. During the development of the nervous system different types of neurons group together to enable specific functions…

Adaptation and Self-Organizing Systems · Physics 2019-12-18 Michał Łepek , Piotr Fronczak

We study the temporal co-variation of network co-evolution via the cross-link structure of networks, for which we take advantage of the formalism of hypergraphs to map cross-link structures back to network nodes. We investigate two sets of…

Disordered Systems and Neural Networks · Physics 2015-06-16 Danielle S. Bassett , Nicholas F. Wymbs , Mason A. Porter , Peter J. Mucha , Scott T. Grafton

The neocortex, a complex system driving multi-region interactions, remains a core puzzle in neuroscience. Despite quantitative insights across brain scales, understanding the mechanisms underlying neural activities is challenging. Advances…

Neurons and Cognition · Quantitative Biology 2024-11-27 Xiaochen Wang , Yuxuan Wu , Feng Zhang , Jin Wang

We propose a modeling framework for growing multiplexes where a node can belong to different networks. We define new measures for multiplexes and we identify a number of relevant ingredients for modeling their evolution such as the coupling…

Physics and Society · Physics 2013-08-01 Vincenzo Nicosia , Ginestra Bianconi , Vito Latora , Marc Barthelemy

A great variety of systems in nature, society and technology -- from the web of sexual contacts to the Internet, from the nervous system to power grids -- can be modeled as graphs of vertices coupled by edges. The network structure,…

Adaptation and Self-Organizing Systems · Physics 2012-10-10 Petter Holme , Jari Saramäki

Networks embedded in space can display all sorts of transitions when their structure is modified. The nature of these transitions (and in some cases crossovers) can differ from the usual appearance of a giant component as observed for the…

Statistical Mechanics · Physics 2018-12-19 Marc Barthelemy

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

Gastrulation, namely cell internalization, is a significant milestone during the development of metazoans from worm to human, which generates multiple embryonic layers with distinct cell fates and spatial organizations. Although many…

Cell Behavior · Quantitative Biology 2022-01-17 Jiao Miao , Guoye Guan , Chao Tang

We study the co-evolution of network structure and node states in a model of multiple state interacting agents. The system displays two transitions, network recombination and fragmentation, governed by time scales that emerge from the…

Physics and Society · Physics 2011-11-10 F. Vazquez , J. C. Gonzalez-Avella , V. M. Eguiluz , M. San Miguel

Network flow is a powerful mathematical framework to systematically explore the relationship between structure and function in biological, social, and technological networks. We introduce a new pipelining model of flow through networks…

Neural and Evolutionary Computing · Computer Science 2019-11-04 Lavanya Marla , Lav R. Varshney , Devavrat Shah , Nirmal A. Prakash , Michael E. Gale

How the very first nervous systems evolved remains a fundamental open question. Molecular and genomic techniques have revolutionized our knowledge of the molecular ingredients behind this transition but not yet provided a clear picture of…

Neurons and Cognition · Quantitative Biology 2017-10-31 Ronald A. J. van Elburg , Oltman O. de Wiljes , Michael Biehl , Fred A. Keijzer

We introduce a model for the emergence of innovations, in which cognitive processes are described as random walks on the network of links among ideas or concepts, and an innovation corresponds to the first visit of a node. The transition…

Physics and Society · Physics 2018-01-25 Iacopo Iacopini , Staša Milojević , Vito Latora