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We propose a constraint-based algorithm, which automatically determines causal relevance thresholds, to infer causal networks from data. We call these topological thresholds. We present two methods for determining the threshold: the first…

Machine Learning · Statistics 2024-04-24 Filipe Barroso , Diogo Gomes , Gareth J. Baxter

Inference of gene regulatory networks has been an active area of research for around 20 years, leading to the development of sophisticated inference algorithms based on a variety of assumptions and approaches. With the always increasing…

Molecular Networks · Quantitative Biology 2022-11-03 Malvina Marku , Vera Pancaldi

In this paper we propose a new methodology for decision-making under uncertainty using recent advancements in the areas of nonlinear stochastic optimal control theory, applied mathematics, and machine learning. Grounded on the fundamental…

Robotics · Computer Science 2021-07-12 Marcus Pereira , Ziyi Wang , Ioannis Exarchos , Evangelos A. Theodorou

The unique problems and phenomena in the distributed voltage control of large-scale power distribution systems with extremely-high DER-penetration are targeted in this paper. First, a DER-explicit distribution network model and voltage…

Systems and Control · Electrical Eng. & Systems 2021-01-21 Ying Xu , Zhihua Qu

Non-interference, in transitive or intransitive form, is defined here over unbounded (Place/Transition) Petri nets. The definitions are adaptations of similar, well-accepted definitions introduced earlier in the framework of labelled…

Cryptography and Security · Computer Science 2011-03-01 Eike Best , Philippe Darondeau , Roberto Gorrieri

Contemporary undertakings provide limitless opportunities for widespread application of machine reasoning and artificial intelligence in situations characterised by uncertainty, hostility and sheer volume of data. The paper develops a…

Artificial Intelligence · Computer Science 2022-08-05 Branko Ristic , Alessio Benavoli , Sanjeev Arulampalam

In this paper, we study a novel inference paradigm, termed as schema inference, that learns to deductively infer the explainable predictions by rebuilding the prior deep neural network (DNN) forwarding scheme, guided by the prevalent…

Computer Vision and Pattern Recognition · Computer Science 2023-07-20 Haofei Zhang , Mengqi Xue , Xiaokang Liu , Kaixuan Chen , Jie Song , Mingli Song

Module network inference is a statistical method to reconstruct gene regulatory networks, which uses probabilistic graphical models to learn modules of coregulated genes and their upstream regulatory programs from genome-wide gene…

Quantitative Methods · Quantitative Biology 2019-05-28 Pau Erola , Eric Bonnet , Tom Michoel

Neural networks are powerful tools for data-driven modeling of complex dynamical systems, enhancing predictive capability for control applications. However, their inherent nonlinearity and black-box nature challenge control designs that…

Systems and Control · Electrical Eng. & Systems 2025-05-20 Xiao Li , Tianhao Wei , Changliu Liu , Anouck Girard , Ilya Kolmanovsky

Social science studies dealing with control in networks typically resort to heuristics or describing the static control distribution. Optimal policies, however, require interventions that optimize control over a socioeconomic network…

Social and Information Networks · Computer Science 2021-08-24 Jannes Nys , Milan van den Heuvel , Koen Schoors , Bruno Merlevede

The control of biological systems presents interesting applications such as cell reprogramming or drug target identification. A common type of control strategy consists in a set of interventions that, by fixing the values of some variables,…

Molecular Networks · Quantitative Biology 2021-12-21 Laura Cifuentes Fontanals , Elisa Tonello , Heike Siebert

Infinite-state systems such as distributed protocols are challenging to verify using interactive theorem provers or automatic verification tools. Of these techniques, deductive verification is highly expressive but requires the user to…

Programming Languages · Computer Science 2019-05-21 Yotam M. Y. Feldman , James R. Wilcox , Sharon Shoham , Mooly Sagiv

This paper explores some variations of a hierarchical control framework that has been recently proposed. The framework is dedicated to control a network of interconnected subsystems such as the ones describing cryogenic processes or power…

Systems and Control · Electrical Eng. & Systems 2022-01-07 Xuan-Huy Pham , Mazen Alamir , François Bonne

Predicting how the brain can be driven to specific states by means of internal or external control requires a fundamental understanding of the relationship between neural connectivity and activity. Network control theory is a powerful tool…

Neurons and Cognition · Quantitative Biology 2019-08-12 Teresa M. Karrer , Jason Z. Kim , Jennifer Stiso , Ari E. Kahn , Fabio Pasqualetti , Ute Habel , Danielle S. Bassett

Understanding and interacting with everyday physical scenes requires rich knowledge about the structure of the world, represented either implicitly in a value or policy function, or explicitly in a transition model. Here we introduce a new…

Convolutional neural networks (CNNs) have achieved superior accuracy in many visual related tasks. However, the inference process through intermediate layers is opaque, making it difficult to interpret such networks or develop trust in…

Computer Vision and Pattern Recognition · Computer Science 2021-10-22 Yael Konforti , Alon Shpigler , Boaz Lernerand Aharon Bar-Hillel

Application of the turbo principle to multiuser decoding results in an exchange of probability distributions between two sets of constraints. Firstly, constraints imposed by the multiple-access channel, and secondly, individual constraints…

Information Theory · Computer Science 2007-07-13 Adriel Kind , Alex Grant

The network inference problem consists of reconstructing the edge set of a network given traces representing the chronology of infection times as epidemics spread through the network. This problem is a paradigmatic representative of…

Data Structures and Algorithms · Computer Science 2013-08-14 Bruno Abrahao , Flavio Chierichetti , Robert Kleinberg , Alessandro Panconesi

Many physical, biological, and social phenomena can be described by cascades taking place on a network. Often, the activity can be empirically observed, but not the underlying network of interactions. In this paper we offer three…

Social and Information Networks · Computer Science 2017-07-24 Sushrut Ghonge , Dervis Can Vural

We propose a novel training method that integrates rules into deep learning, in a way the strengths of the rules are controllable at inference. Deep Neural Networks with Controllable Rule Representations (DeepCTRL) incorporates a rule…

Machine Learning · Computer Science 2021-11-18 Sungyong Seo , Sercan O. Arik , Jinsung Yoon , Xiang Zhang , Kihyuk Sohn , Tomas Pfister
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