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We study the two-dimensional hierarchical rectangle packing problem, motivated by applications in analog integrated circuit layout, facility layout, and logistics. Unlike classical strip or bin packing, the dimensions of the container are…

Computational Geometry · Computer Science 2025-12-24 Josef Grus , Zdeněk Hanzálek , Christian Artigues , Cyrille Briand , Emmanuel Hebrard

Studying physical mechanisms and common geometric principles underlying known spherical packings is crucial for rational design of synthetic nanocontainers. Here we model the growth of small spherical shells containing n<72 identical…

Soft Condensed Matter · Physics 2026-03-16 Ivan Yu. Golushko , Olga V. Konevtsova , Daria S. Roshal , Sergei B. Rochal

Shortly after the determination of the first protein x-ray crystal structures, researchers analyzed their cores and reported packing fractions $\phi \approx 0.75$, a value that is similar to close packing equal-sized spheres. A limitation…

Biomolecules · Quantitative Biology 2016-04-06 Jennifer C. Gaines , W. Wendell Smith , Lynne Regan , Corey S. O'Hern

In earlier works \cite{Sz06-1}, \cite{Sz06-2}, \cite{Sz13-3} and \cite{Sz13-4} we have investigated the densest packings and the least dense coverings by congruent hyperballs (hyperspheres) to the regular prism tilings in $n$-dimensional…

Metric Geometry · Mathematics 2016-03-04 Jenö Szirmai

In \cite{Sz17-2} we proved that to each saturated congruent hyperball packing exists a decomposition of $3$-dimensional hyperbolic space $\mathbb{H}^3$ into truncated tetrahedra. Therefore, in order to get a density upper bound for…

Metric Geometry · Mathematics 2018-12-18 Jenő Szirmai

In this paper we consider the problem of the strict self-assembly of infinite fractals within tile self-assembly. In particular, we provide tile assembly algorithms for the assembly of the discrete Sierpinski triangle and the discrete…

Computational Geometry · Computer Science 2015-05-26 Cameron T. Chalk , Dominic A. Fernandez , Alejandro Huerta , Mario A. Maldonado , Robert T. Schweller , Leslie Sweet

The problem of packing a system of particles as densely as possible is foundational in the field of discrete geometry and is a powerful model in the material and biological sciences. As packing problems retreat from the reach of solution by…

Metric Geometry · Mathematics 2012-12-18 Yoav Kallus , Veit Elser , Simon Gravel

Self-assembly is a ubiquitous process in synthetic and biological systems, broadly defined as the spontaneous organization of multiple subunits (e.g. macromolecules, particles) into ordered multi-unit structures. The vast majority of…

Soft Condensed Matter · Physics 2023-08-08 Michael F. Hagan , Gregory M. Grason

One versatile route to the creation of two-dimensional crystal structures on the nanometer to micrometer scale is the self-assembly of colloidal particles at an interface. Here, we explore the crystal phases that can be expected from the…

Soft Condensed Matter · Physics 2020-05-29 Etienne Fayen , Anuradha Jagannathan , Giuseppe Foffi , Frank Smallenburg

Creating materials with structure that is independently controllable at a range of scales requires breaking naturally occurring hierarchies. Breaking these hierarchies can be achieved via the decoupling of building block attributes from…

Soft Condensed Matter · Physics 2022-07-04 Lucia Baldauf , Erin G. Teich , Peter Schall , Greg van Anders , Laura Rossi

A three-center phenomenological model able to explain, at least from a qualitative point of view, the difference in the observed yield of a particle-accompanied fission and that of binary fission was developed. It is derived from the liquid…

Nuclear Theory · Physics 2007-05-23 D. N. Poenaru , B. Dobrescu , W. Greiner

Spontaneous phase separation, or demixing, is important in biological phenomena such as cell sorting. In particle-based models, an open question is whether differences in diffusivity can drive such demixing. While…

Soft Condensed Matter · Physics 2023-07-10 Erin McCarthy , Ojan Damavandi , Raj Kumar Manna , M. Lisa Manning

A mechanically-based structural optimization method is utilized to explore the phenomena of jamming for assemblies of frictionless Platonic solids. Systems of these regular convex polyhedra exhibit mechanically stable phases with density…

Soft Condensed Matter · Physics 2012-05-08 Kyle C. Smith , Meheboob Alam , Timothy S. Fisher

We investigate the segregation pattern formations of strongly and weakly fluctuated Brownian particle mixtures, which are confined in spherical containers with finite volumes. We consider systems where the container restricts the motions of…

Soft Condensed Matter · Physics 2015-06-19 Akinori Awazu

We study the local structural changes along the jamming transitions in asymmetric bidisperse granu\-lar packings. The local structure of the packing is assessed by the contact orientational order, $\tilde{Q}_{\ell}$, that quantifies the…

Soft Condensed Matter · Physics 2024-11-06 Juan C. Petit , Matthias Sperl

We study a multi-body finite element model of a packing of hydrogel particles using the Flory-Rehner constitutive law to model the deformation of the swollen polymer network. We show that while the dependence of the pressure, $\Pi$, on the…

Soft Condensed Matter · Physics 2024-07-23 Ahmed Elgailani , Craig E Maloney

In the usual segregation scenario for stable inclined chute flows of bidisperse mixtures of fine and coarse spherical particles, coarse particles rise toward the free surface, forming a coarse-rich region atop the flowing pile. Beyond a…

Soft, amorphous solids such as tissues, foams, and emulsions are composed of deformable particles. However, the effect of single-particle deformability on the collective behavior of soft solids is still poorly understood. We perform…

Soft Condensed Matter · Physics 2021-06-02 John D. Treado , Dong Wang , Arman Boromand , Michael P. Murrell , Mark D. Shattuck , Corey S. O'Hern

Shear thickening suspensions of non-Brownian polydisperse particles are simulated in 2D using a discrete element method based algorithm (LF-DEM) at high packing fractions ($\phi$) and large non-dimensional stresses ($\sigma$). Rigidity…

Soft Condensed Matter · Physics 2026-02-11 Sourav Kumar Singh , Vishant Tyagi , Aritra Santra

An optimal control strategy is developed to construct nanostructures of desired geometry along line segments by means of directed self-assembly of charged particles. Such a control strategy determines the electric potentials of a set of…

Dynamical Systems · Mathematics 2016-03-02 Arash Komaee , Paul I. Barton