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A generalization of modularity, called block modularity, is defined. This is a quality function which evaluates a label assignment against an arbitrary block pattern. Therefore, unlike standard modularity or its variants, arbitrary network…

Physics and Society · Physics 2023-03-01 Rudy Arthur

Modularity is a desirable characteristic for software systems. In this article we propose to use a quantitative method from complex network sciences to estimate the coherence between the modularity of the dependency network of large open…

Software Engineering · Computer Science 2013-03-04 Marcelo Serrano Zanetti , Frank Schweitzer

Because networks can be used to represent many complex systems, they have attracted considerable attention in physics, computer science, sociology, and many other disciplines. One of the most important areas of network science is the…

Social and Information Networks · Computer Science 2016-11-18 Huiyi Hu , Yves van Gennip , Blake Hunter , Mason A. Porter , Andrea L. Bertozzi

One of the main properties of biological systems is modularity, which manifests itself at all levels of their organization, starting with the level of molecular genetics, ending with the level of whole organisms and their communities. In a…

Neural and Evolutionary Computing · Computer Science 2018-11-20 Anton Eremeev , Alexander Spirov

Given the large size and complexity of most biochemical regulation and signaling networks, there is a non-trivial relationship between the micro-level logic of component interactions and the observed macro-dynamics. Here we address this…

Molecular Networks · Quantitative Biology 2023-04-19 Thomas Parmer , Luis M. Rocha

Many real-world complex networks exhibit a community structure, in which the modules correspond to actual functional units. Identifying these communities is a key challenge for scientists. A common approach is to search for the network…

Physics and Society · Physics 2016-12-22 Federico Botta , Charo I. del Genio

The modular structure of brain networks supports specialized information processing, complex dynamics, and cost-efficient spatial embedding. Inter-individual variation in modular structure has been linked to differences in performance,…

Much effort has gone into understanding the modular nature of complex networks. Communities, also known as clusters or modules, are typically considered to be densely interconnected groups of nodes that are only sparsely connected to other…

Physics and Society · Physics 2012-06-26 James P. Bagrow

Boolean networks have been used in a variety of settings, as models for general complex systems as well as models of specific systems in diverse fields, such as biology, engineering, and computer science. Traditionally, their properties as…

Dynamical Systems · Mathematics 2024-02-02 Matthew Wheeler , Claus Kadelka , Alan Veliz-Cuba , David Murrugarra , Reinhard Laubenbacher

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their…

Molecular Networks · Quantitative Biology 2008-02-14 Arend Hintze , Christoph Adami

Estimating influential nodes in large scale networks including but not limited to social networks, biological networks, communication networks, emerging smart grids etc. is a topic of fundamental interest. To understand influences of nodes…

Social and Information Networks · Computer Science 2014-06-13 Sima Das

Modularity has been widely studied as a mechanism to improve the capabilities of neural networks through various techniques such as hand-crafted modular architectures and automatic approaches. While these methods have sometimes shown…

Neural and Evolutionary Computing · Computer Science 2024-10-28 Humphrey Munn , Marcus Gallagher

Communities are fundamental entities for the characterization of the structure of real networks. The standard approach to the identification of communities in networks is based on the optimization of a quality function known as…

Physics and Society · Physics 2013-07-15 Filippo Radicchi

We consider the problem of detecting communities or modules in networks, groups of vertices with a higher-than-average density of edges connecting them. Previous work indicates that a robust approach to this problem is the maximization of…

Data Analysis, Statistics and Probability · Physics 2007-05-23 M. E. J. Newman

Scaling model capacity has been vital in the success of deep learning. For a typical network, necessary compute resources and training time grow dramatically with model size. Conditional computation is a promising way to increase the number…

Machine Learning · Computer Science 2018-11-14 Louis Kirsch , Julius Kunze , David Barber

We propose a novel method to find the community structure in complex networks based on an extremal optimization of the value of modularity. The method outperforms the optimal modularity found by the existing algorithms in the literature. We…

Disordered Systems and Neural Networks · Physics 2009-11-11 J. Duch , A. Arenas

It has been hypothesized that some form of "modular" structure in artificial neural networks should be useful for learning, compositionality, and generalization. However, defining and quantifying modularity remains an open problem. We cast…

Machine Learning · Computer Science 2022-06-23 Richard D. Lange , David S. Rolnick , Konrad P. Kording

Neural networks (NNs) whose subnetworks implement reusable functions are expected to offer numerous advantages, including compositionality through efficient recombination of functional building blocks, interpretability, preventing…

Neural and Evolutionary Computing · Computer Science 2021-03-09 Róbert Csordás , Sjoerd van Steenkiste , Jürgen Schmidhuber

Modular structure is ubiquitous among complex networks. We note that most such systems are subject to multiple structural and functional constraints, e.g., minimizing the average path length and the total number of links, while maximizing…

Physics and Society · Physics 2007-11-05 Raj Kumar Pan , Sitabhra Sinha

Modular structure is ubiquitous in real-world complex networks, and its detection is important because it gives insights in the structure-functionality Modular structure is ubiquitous in real-world complex networks, and its detection is…

Data Analysis, Statistics and Probability · Physics 2008-05-29 Alex Arenas , Alberto Fernandez , Sergio Gomez