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We propose a novel method for topological analysis of unweighted graphs which is based on \textit{persistent homology}. The proposed method maps the input graph to a complete weighted graph where the weighting function maps each edge to a…

Algebraic Topology · Mathematics 2020-07-31 Padraig Corcoran

The inductive biases of graph representation learning algorithms are often encoded in the background geometry of their embedding space. In this paper, we show that general directed graphs can be effectively represented by an embedding model…

Machine Learning · Statistics 2021-06-17 Aaron Sim , Maciej Wiatrak , Angus Brayne , Páidí Creed , Saee Paliwal

Existing research highlights the crucial role of topological priors in image segmentation, particularly in preserving essential structures such as connectivity and genus. Accurately capturing these topological features often requires…

Computer Vision and Pattern Recognition · Computer Science 2026-01-19 Wenxiao Li , Xue-Cheng Tai , Jun Liu

Graph embeddings, wherein the nodes of the graph are represented by points in a continuous space, are used in a broad range of Graph ML applications. The quality of such embeddings crucially depends on whether the geometry of the space…

Machine Learning · Statistics 2022-02-03 Francesco Di Giovanni , Giulia Luise , Michael Bronstein

Complex network topology might get pretty complicated challenging many network analysis objectives, such as community detection for example. This however makes common emergent network phenomena such as scale-free topology or small-world…

Social and Information Networks · Computer Science 2018-06-12 Stanislav Sobolevsky

While representation learning has yielded a great success on many graph learning tasks, there is little understanding behind the structures that are being captured by these embeddings. For example, we wonder if the topological features,…

Machine Learning · Computer Science 2021-10-11 Maroun Haddad , Mohamed Bouguessa

We discuss the topological properties of the independence complex of Kneser graphs, Ind(KG$(n, k))$, with $n\geq 3$ and $k\geq 1$. By identifying one kind of maximal simplices through projective planes, we obtain homology generators for the…

Combinatorics · Mathematics 2024-04-17 Ziqin Feng , Guanghui Wang

Homology is a tool in topological data analysis which measures the shape of the data. In many cases, these measurements translate into new insights which are not available by other means. To compute homology, we rely on mathematical…

Quantum Physics · Physics 2016-06-07 Raouf Dridi , Hedayat Alghassi

Persistent homology is one of the most popular methods in topological data analysis. An initial step in its use involves constructing a nested sequence of simplicial complexes. There is an abundance of different complexes to choose from,…

Algebraic Topology · Mathematics 2026-01-16 Niklas Canova , Sara Kališnik , Aaron Moser , Bastian Rieck , Ana Žegarac

Graph Neural Networks (GNNs) have gained popularity in various learning tasks, with successful applications in fields like molecular biology, transportation systems, and electrical grids. These fields naturally use graph data, benefiting…

Machine Learning · Computer Science 2024-09-23 Caio F. Deberaldini Netto , Zhiyang Wang , Luana Ruiz

Autoencoding is a popular method in representation learning. Conventional autoencoders employ symmetric encoding-decoding procedures and a simple Euclidean latent space to detect hidden low-dimensional structures in an unsupervised way.…

Machine Learning · Computer Science 2024-10-07 Stefan C. Schonsheck , Scott Mahan , Timo Klock , Alexander Cloninger , Rongjie Lai

A geometric entropy is defined as the Riemannian volume of the parameter space of a statistical manifold associated with a given network. As such it can be a good candidate for measuring networks complexity. Here we investigate its ability…

Mathematical Physics · Physics 2017-12-20 D. Felice , R. Franzosi , S. Mancini , M. Pettini

Deriving meaningful representations from complex, high-dimensional data in unsupervised settings is crucial across diverse machine learning applications. This paper introduces a framework for multi-scale graph network embedding based on…

Machine Learning · Computer Science 2025-08-12 Shay Deutsch , Lionel Yelibi , Alex Tong Lin , Arjun Ravi Kannan

Many approaches in the field of machine learning and data analysis rely on the assumption that the observed data lies on lower-dimensional manifolds. This assumption has been verified empirically for many real data sets. To make use of this…

Machine Learning · Computer Science 2022-09-27 Erik Thordsen , Erich Schubert

We quantify the topological expansion properties of bounded degree simplicial complexes in terms of a family of sublinear functions, in analogy with the separation profile of Benjamini-Schramm-Tim\'ar for classical expansion of bounded…

Metric Geometry · Mathematics 2024-11-21 David Hume

An important problem in computational topology is to calculate the homology of a space from samples. In this work, we develop a statistical approach to this problem by calculating the expected rank of an induced map on homology from a…

Computation · Statistics 2023-08-04 Tianyi Sun , Bradley Nelson

Representing graphs as sets of node embeddings in certain curved Riemannian manifolds has recently gained momentum in machine learning due to their desirable geometric inductive biases, e.g., hierarchical structures benefit from hyperbolic…

Machine Learning · Computer Science 2020-06-09 Calin Cruceru , Gary Bécigneul , Octavian-Eugen Ganea

Graphs face challenges when dealing with massive datasets. They are essential tools for modeling interconnected data and often become computationally expensive. Graph embedding techniques, on the other hand, provide an efficient approach.…

Databases · Computer Science 2024-12-16 Plácido A Souza Neto

We consider when automorphisms of a graph can be induced by homeomorphisms of embeddings of the graph in a $3$-manifold. In particular, we prove that every automorphism of a graph is induced by a homeomorphism of some embedding of the graph…

Geometric Topology · Mathematics 2021-12-15 Erica Flapan , Song Yu

Manifold learning builds on the "manifold hypothesis," which posits that data in high-dimensional datasets are drawn from lower-dimensional manifolds. Current tools generate global embeddings of data, rather than the local maps used to…

Machine Learning · Computer Science 2025-08-28 Serena Hughes , Timothy Hamilton , Tom Kolokotrones , Eric J. Deeds