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In binary jumbled pattern matching we wish to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of size $i$ and has exactly $j$ 1-bits. The problem naturally generalizes to…

Data Structures and Algorithms · Computer Science 2014-07-01 Danny Hermelin , Gad M. Landau , Yuri Rabinovich , Oren Weimann

We consider a sliding window $W$ over a stream of characters from some alphabet of constant size. The user wants to perform deterministic substring matching on the current sliding window content and obtain positions of the matches. We…

Data Structures and Algorithms · Computer Science 2018-09-07 Andrej Brodnik , Matevž Jekovec

Cartesian tree matching is the problem of finding all substrings in a given text which have the same Cartesian trees as that of a given pattern. In this paper, we deal with Cartesian tree matching for the case of multiple patterns. We…

Data Structures and Algorithms · Computer Science 2019-11-06 Geonmo Gu , Siwoo Song , Simone Faro , Thierry Lecroq , Kunsoo Park

The suffix tree is arguably the most fundamental data structure on strings: introduced by Weiner (SWAT 1973) and McCreight (JACM 1976), it allows solving a myriad of computational problems on strings in linear time. Motivated by its large…

Data Structures and Algorithms · Computer Science 2026-05-07 Ruben Becker , Davide Cenzato , Travis Gagie , Sung-Hwan Kim , Ragnar Groot Koerkamp , Giovanni Manzini , Nicola Prezza

We present several results about position heaps, a relatively new alternative to suffix trees and suffix arrays. First, we show that, if we limit the maximum length of patterns to be sought, then we can also limit the height of the heap and…

Data Structures and Algorithms · Computer Science 2013-01-15 Travis Gagie , Wing-Kai Hon , Tsung-Han Ku

We present the first worst-case linear time algorithm that directly computes the parameterized suffix and LCP arrays for constant sized alphabets. Previous algorithms either required quadratic time or the parameterized suffix tree to be…

Data Structures and Algorithms · Computer Science 2019-06-04 Noriki Fujisato , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

Given a pattern $P$ and a text $T$, both strings over a binary alphabet, the binary jumbled string matching problem consists in telling whether any permutation of $P$ occurs in $T$. The indexed version of this problem, i.e., preprocessing a…

Data Structures and Algorithms · Computer Science 2013-05-09 Emanuele Giaquinta , Szymon Grabowski

This paper derives a unifying theorem establishing consistency results for a broad class of tree-based algorithms. It improves current results in two aspects. First of all, it can be applied to algorithms that vary from traditional Random…

Statistics Theory · Mathematics 2024-02-22 Ricardo Blum , Munir Hiabu , Enno Mammen , Joseph T. Meyer

$V$-order is a global order on strings related to Unique Maximal Factorization Families (UMFFs), which are themselves generalizations of Lyndon words. $V$-order has recently been proposed as an alternative to lexicographical order in the…

Data Structures and Algorithms · Computer Science 2015-07-28 Ali Alatabbi , Jacqueline W. Daykin , M. Sohel Rahman , W. F. Smyth

In order to speed-up classification models when facing a large number of categories, one usual approach consists in organizing the categories in a particular structure, this structure being then used as a way to speed-up the prediction…

Machine Learning · Computer Science 2015-11-26 Aurélia Léon , Ludovic Denoyer

We present an approach to email filtering based on the suffix tree data structure. A method for the scoring of emails using the suffix tree is developed and a number of scoring and score normalisation functions are tested. Our results show…

Artificial Intelligence · Computer Science 2007-05-23 Rajesh M. Pampapathi , Boris Mirkin , Mark Levene

We model collapsible and ordered pushdown systems with term rewriting, by encoding higher-order stacks and multiple stacks into trees. We show a uniform inverse preservation of recognizability result for the resulting class of term…

Formal Languages and Automata Theory · Computer Science 2014-10-16 Lorenzo Clemente

Theoretical background and an implementation of the (p)-group generation algorithm by Newman and O'Brien are used to provide computational evidence of a new type of periodically repeating patterns in pruned descendant trees of finite…

Group Theory · Mathematics 2015-02-12 Daniel C. Mayer

We revisit the problem of longest common property preserving substring queries introduced by~Ayad et al. (SPIRE 2018, arXiv 2018). We consider a generalized and unified on-line setting, where we are given a set $X$ of $k$ strings of total…

Data Structures and Algorithms · Computer Science 2019-06-14 Kazuki Kai , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda , Tomasz Kociumaka

We consider random binary trees that appear as the output of certain standard algorithms for sorting and searching if the input is random. We introduce the subtree size metric on search trees and show that the resulting metric spaces…

Probability · Mathematics 2014-05-06 Rudolf Grübel

Many tasks in natural language processing, ranging from machine translation to question answering, can be reduced to the problem of matching two sentences or more generally two short texts. We propose a new approach to the problem, called…

Computation and Language · Computer Science 2015-06-15 Mingxuan Wang , Zhengdong Lu , Hang Li , Qun Liu

Regular expression patterns are a key feature of document processing languages like Perl and XDuce. It is in this context that the first and longest match policies have been proposed to disambiguate the pattern matching process. We formally…

Programming Languages · Computer Science 2007-05-23 Stijn Vansummeren

We give an algorithm to enumerate the results on trees of monadic second-order (MSO) queries represented by nondeterministic tree automata. After linear time preprocessing (in the input tree), we can enumerate answers with linear delay (in…

Databases · Computer Science 2019-08-28 Antoine Amarilli , Pierre Bourhis , Stefan Mengel , Matthias Niewerth

Formalisms based on temporal logics interpreted over finite strict linear orders, known in the literature as finite traces, have been used for temporal specification in automated planning, process modelling, (runtime) verification and…

Logic in Computer Science · Computer Science 2022-02-02 Alessandro Artale , Andrea Mazzullo , Ana Ozaki

In this paper, we consider the problem of identifying patterns of interest in colored strings. A colored string is a string where each position is assigned one of a finite set of colors. Our task is to find substrings of the colored string…

Data Structures and Algorithms · Computer Science 2024-04-16 Zsuzsanna Lipták , Simon J. Puglisi , Massimiliano Rossi
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