Related papers: Potential Maximal Clique Algorithms for Perfect Ph…
A $k$-defective clique is a relaxation of the traditional clique definition, allowing up to $k$ missing edges. This relaxation is crucial in various real-world applications such as link prediction, community detection, and social network…
Wall-clock-time is minimized for a solution to a linear-program with block-diagonal-structure, by decomposing the linear-program into as many small-sized subproblems as possible, each block resulting in a separate subproblem, when the…
Clique is one of the most fundamental models for cohesive subgraph mining in network analysis. Existing clique model mainly focuses on unsigned networks. However, in real world, many applications are modeled as signed networks with positive…
Here we show that deciding whether two rooted binary phylogenetic trees on the same set of taxa permit a cherry-picking sequence, a special type of elimination order on the taxa, is NP-complete. This improves on an earlier result which…
Our main result essentially reduces the problem of finding an edge-decomposition of a balanced r-partite graph of large minimum degree into r-cliques to the problem of finding a fractional r-clique decomposition or an approximate one.…
In many high-dimensional problems, like sparse-PCA, planted clique, or clustering, the best known algorithms with polynomial time complexity fail to reach the statistical performance provably achievable by algorithms free of computational…
This contribution extends the Bron Kerbosch algorithm for solving the maximum weight clique problem, where continuous-valued weights are assigned to both, vertices and edges. We applied the proposed algorithm to graph matching problems.
We continue the study of graph classes in which the treewidth can only be large due to the presence of a large clique, and, more specifically, of graph classes with bounded tree-independence number. In [Dallard, Milani\v{c}, and…
In this paper we consider the problem of computing an mRNA sequence of maximal similarity for a given mRNA of secondary structure constraints, introduced by Backofen et al. in [BNS02] denoted as the MRSO problem. The problem is known to be…
The widely studied edge modification problems ask how to minimally alter a graph to satisfy certain structural properties. In this paper, we introduce and study a new edge modification problem centered around transforming a given graph into…
In this work, a graph partitioning problem in a fixed number of connected components is considered. Given an undirected graph with costs on the edges, the problem consists of partitioning the set of nodes into a fixed number of subsets with…
In the Minimum Clique Routing Problem on Cycles \textsc{MCRPC} we are given a cycle together with a set of demands (weighted origin-destination pairs) and the goal is to route all the pairs minimizing the maximum weighted clique of the…
Random fields have remained a topic of great interest over past decades for the purpose of structured inference, especially for problems such as image segmentation. The local nodal interactions commonly used in such models often suffer the…
The reconstruction of the history of evolutionary genome-wide events among a set of related organisms is of great biological interest. A simplified model that captures only content modifying operations was introduced recently. It allows the…
Semi-supervised clustering is a basic problem in various applications. Most existing methods require knowledge of the ideal cluster number, which is often difficult to obtain in practice. Besides, satisfying the must-link constraints is…
The Exact Matching problem asks whether a bipartite graph with edges colored red and blue admits a perfect matching with exactly $t$ red edges. Introduced by Papadimitriou and Yannakakis in 1982, the problem has resisted deterministic…
The binary symmetric stochastic block model deals with a random graph of $n$ vertices partitioned into two equal-sized clusters, such that each pair of vertices is connected independently with probability $p$ within clusters and $q$ across…
This paper is related to the problem of finding the maximal quasi-bicliques in a bipartite graph (bigraph). A quasi-biclique in the bigraph is its "almost" complete subgraph. The relaxation of completeness can be understood variously; here,…
Maximal clique enumeration (MCE) is a fundamental problem in graph theory and is used in many applications, such as social network analysis, bioinformatics, intelligent agent systems, cyber security, etc. Most existing MCE algorithms focus…
We propose a polynomial-time algorithm which takes as input a finite set of points of $\mathbb R^3$ and compute, up to arbitrary precision, a maximum subset with diameter at most $1$. More precisely, we give the first randomized EPTAS and…