Related papers: Potential Maximal Clique Algorithms for Perfect Ph…
We consider problems that can be formulated as a task of finding an optimal triangulation of a graph w.r.t. some notion of optimality. We present algorithms parameterized by the size of a minimum edge clique cover ($cc$) to such problems.…
Potential maximal cliques and minimal separators are combinatorial objects which were introduced and studied in the realm of minimal triangulations problems including Minimum Fill-in and Treewidth. We discover unexpected applications of…
The perfect phylogeny problem is a classic problem in computational biology, where we seek an unrooted phylogeny that is compatible with a set of qualitative characters. Such a tree exists precisely when an intersection graph associated…
The maximum clique problem is a classical NP-complete problem in graph theory and has important applications in many domains. In this paper we show, in a partially non-constructive way, the existence of an exact polynomial-time algorithm…
In this paper, we present new efficiently solvable cases of the Minimum Uncovering Branching problem, an optimization problem with applications in cancer genomics introduced by Hujdurovi\'c, Husi\'c, Milani\v{c}, Rizzi, and Tomescu in 2018.…
Finding complete subgraphs in a graph, that is, cliques, is a key problem and has many real-world applications, e.g., finding communities in social networks, clustering gene expression data, modeling ecological niches in food webs, and…
In this paper, we provide polynomial-time algorithms for different extensions of the matching counting problem, namely maximal matchings, path matchings (linear forest) and paths, on graph classes of bounded clique-width. For maximal…
A set of vertices in a graph forms a potential maximal clique if there exists a minimal chordal completion in which it is a maximal clique. Potential maximal cliques were first introduced as a key tool to obtain an efficient, though…
The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, information retrieval and many other areas related to the World Wide Web. There exist several algorithms for the problem with…
Motivated by applications in cancer genomics and following the work of Hajirasouliha and Raphael (WABI 2014), Hujdurovi\'c et al. (IEEE TCBB, to appear) introduced the minimum conflict-free row split (MCRS) problem: split each row of a…
The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, informatics, and many other areas. Although there exist several algorithms with acceptable runtimes for certain classes of…
We develop a new characterization of potential maximal cliques of a triconnected planar graph and, using this characterization, give a polynomial delay algorithm generating all potential maximal cliques of a given triconnected planar graph.…
In this paper, we relate the problem of finding a maximum clique to the intersection number of the input graph (i.e. the minimum number of cliques needed to edge cover the graph). In particular, we consider the maximum clique problem for…
Multiple interval graphs are variants of interval graphs where instead of a single interval, each vertex is assigned a set of intervals on the real line. We study the complexity of the MAXIMUM CLIQUE problem in several classes of multiple…
The maximum clique problem (MCP) is a fundamental problem in graph theory and in computational complexity. Given a graph G, the problem is that of finding the largest clique (complete subgraph) in G. The MCP has many important applications…
We observe that certain large-clique graph triangulations can be useful to reduce both computational and space requirements when making queries on mixed stochastic/deterministic graphical models. We demonstrate that many of these…
The Cluster Deletion problem takes a graph $G$ as input and asks for a minimum size set of edges $X$ such that $G-X$ is the disjoint union of complete graphs. An equivalent formulation is the Clique Partition problem, which asks to find a…
Finding maximum cliques in large networks is a challenging combinatorial problem with many real-world applications. We present a fast algorithm to achieve the exact solution for the maximum clique problem in large sparse networks based on…
The maximal clique problem, to find the maximally sized clique in a given graph, is classically an NP-complete computational problem, which has potential applications ranging from electrical engineering, computational chemistry,…
The MaxClique problem, finding the largest complete subgraph in an Erd{\"o}s-R{\'e}nyi $G(N,p)$ random graph in the large $N$ limit, is a well-known example of a simple problem for which finding any approximate solution within a factor of…