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Sparse principal component analysis (PCA) is a well-established dimensionality reduction technique that is often used for unsupervised feature selection (UFS). However, determining the regularization parameters is rather challenging, and…

Machine Learning · Computer Science 2025-04-07 Long Chen , Xianchao Xiu

Accurate prediction of inter-residue contacts of a protein is important to calcu- lating its tertiary structure. Analysis of co-evolutionary events among residues has been proved effective to inferring inter-residue contacts. The Markov…

Biomolecules · Quantitative Biology 2018-09-05 Haicang Zhang , Qi Zhang , Fusong Ju , Jianwei Zhu , Shiwei Sun , Yujuan Gao , Ziwei Xie , Minghua Deng , Shiwei Sun , Wei-Mou Zheng , Dongbo Bu

This paper presents an entirely unsupervised interest point training framework by jointly learning detector and descriptor, which takes an image as input and outputs a probability and a description for every image point. The objective of…

Computer Vision and Pattern Recognition · Computer Science 2019-07-29 Pei Yan , Yihua Tan , Yuan Xiao , Yuan Tai , Cai Wen

Low-rank matrix completion has achieved great success in many real-world data applications. A matrix factorization model that learns latent features is usually employed and, to improve prediction performance, the similarities between latent…

Machine Learning · Statistics 2020-01-28 Kaiyi Ji , Jian Tan , Jinfeng Xu , Yuejie Chi

This paper aims at the problem of link pattern prediction in collections of objects connected by multiple relation types, where each type may play a distinct role. While common link analysis models are limited to single-type link…

Social and Information Networks · Computer Science 2012-04-13 Sheng Gao , Ludovic Denoyer , Patrick Gallinari

Classical Principal Component Analysis (PCA) approximates data in terms of projections on a small number of orthogonal vectors. There are simple procedures to efficiently compute various functions of the data from the PCA approximation. The…

Machine Learning · Statistics 2019-07-26 Guihong Wan , Crystal Maung , Haim Schweitzer

Software fault prediction (SFP) is a critical task in software engineering, enabling early identification of faults in modules to improve software quality and reduce maintenance costs. This research investigates the combined effects of…

Software Engineering · Computer Science 2026-05-19 Ahmad Nauman Ghazi , Nagajyothi Devarapalli , Ashir Javeed , Sadi Alawadi , Fahed Alkhabbas , Khalid AlKharabsheh

Principal Component Analysis (PCA) is a well known procedure to reduce intrinsic complexity of a dataset, essentially through simplifying the covariance structure or the correlation structure. We introduce a novel algebraic, model-based…

Methodology · Statistics 2021-12-09 Martin Schlather , Felix Reinbott

We study robust PCA for the fully observed setting, which is about separating a low rank matrix $\boldsymbol{L}$ and a sparse matrix $\boldsymbol{S}$ from their sum $\boldsymbol{D}=\boldsymbol{L}+\boldsymbol{S}$. In this paper, a new…

Information Theory · Computer Science 2021-06-29 HanQin Cai , Jian-Feng Cai , Ke Wei

Independent component analysis (ICA) is popular in many applications, including cognitive neuroscience and signal processing. Due to computational constraints, principal component analysis is used for dimension reduction prior to ICA…

Methodology · Statistics 2017-10-03 Benjamin B. Risk , David S. Matteson , David Ruppert

A statistical model of protein families, called profile conditional random fields (CRFs), is proposed. This model may be regarded as an integration of the profile hidden Markov model (HMM) and the Finkelstein-Reva (FR) theory of protein…

Biomolecules · Quantitative Biology 2009-06-01 Akira R. Kinjo

Most popular dimension reduction (DR) methods like t-SNE and UMAP are based on minimizing a cost between input and latent pairwise similarities. Though widely used, these approaches lack clear probabilistic foundations to enable a full…

Probability · Mathematics 2023-10-06 Hugues Van Assel , Thibault Espinasse , Julien Chiquet , Franck Picard

Many problems in real-world applications involve predicting several random variables which are statistically related. Markov random fields (MRFs) are a great mathematical tool to encode such relationships. The goal of this paper is to…

Machine Learning · Computer Science 2015-04-29 Liang-Chieh Chen , Alexander G. Schwing , Alan L. Yuille , Raquel Urtasun

Probabilistic Graphical Models (PGMs) encode conditional dependencies among random variables using a graph -nodes for variables, links for dependencies- and factorize the joint distribution into lower-dimensional components. This makes PGMs…

Fully connected layers are a primary source of memory and computational overhead in deep neural networks due to their dense, often redundant parameterization. While various compression techniques exist, they frequently introduce complex…

Machine Learning · Computer Science 2025-12-16 Maksymilian Szorc

The first order behavior of multivariate heavy-tailed random vectors above large radial thresholds is ruled by a limit measure in a regular variation framework. For a high dimensional vector, a reasonable assumption is that the support of…

Statistics Theory · Mathematics 2019-06-27 Holger Drees , Anne Sabourin

Dimensionality reduction on Riemannian manifolds is challenging due to the complex nonlinear data structures. While probabilistic principal geodesic analysis~(PPGA) has been proposed to generalize conventional principal component analysis…

Machine Learning · Computer Science 2019-09-06 Youshan Zhang , Jiarui Xing , Miaomiao Zhang

Joint probability mass function (PMF) estimation is a fundamental machine learning problem. The number of free parameters scales exponentially with respect to the number of random variables. Hence, most work on nonparametric PMF estimation…

Machine Learning · Computer Science 2021-03-25 Jian Vora , Karthik S. Gurumoorthy , Ajit Rajwade

We introduce a flexible framework for modeling dependent feature allocations. Our approach addresses limitations in traditional nonparametric methods by directly modeling the logit-probability surface of the feature paintbox, enabling the…

Methodology · Statistics 2025-12-22 Bernardo Flores , Yang Ni , Yanxun Xu , Peter Müller

Fair Principal Component Analysis (PCA) is a problem setting where we aim to perform PCA while making the resulting representation fair in that the projected distributions, conditional on the sensitive attributes, match one another.…

Machine Learning · Statistics 2023-10-31 Junghyun Lee , Hanseul Cho , Se-Young Yun , Chulhee Yun