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Reproducible Builds (R-B) guarantee that rebuilding a software package from source leads to bitwise identical artifacts. R-B is a promising approach to increase the integrity of the software supply chain, when installing open source…

Software Engineering · Computer Science 2026-01-30 Julien Malka , Stefano Zacchiroli , Théo Zimmermann

Library dependencies in software ecosystems play a crucial role in the development of software. As newer releases of these libraries are published, developers may opt to pin their dependencies to a particular version. While pinning may have…

Software Engineering · Computer Science 2025-12-22 Vasudev Vikram , Yuvraj Agarwal , Rohan Padhye

Complex software systems have a network of dependencies. Developers often configure package managers (e.g., npm) to automatically update dependencies with each publication of new releases containing bug fixes and new features. When a…

Software Engineering · Computer Science 2024-01-24 Daniel Venturini , Filipe Roseiro Cogo , Ivanilton Polato , Marco A Gerosa , Igor Scaliante Wiese

The R programming language is widely used in large-scale data analyses. It contains especially rich built-in support for dealing with vectors, arrays, and matrices. These operations feature prominently in the applications that form R's…

Programming Languages · Computer Science 2023-04-11 John Wrenn , Anjali Pal , Alexa VanHattum , Shriram Krishnamurthi

Large language models (LLMs) have developed rapidly in recent years, revolutionizing various fields. Despite their widespread success, LLMs heavily rely on external code dependencies from package management systems, creating a complex and…

Cryptography and Security · Computer Science 2025-09-01 Shuhan Liu , Xing Hu , Xin Xia , David Lo , Xiaohu Yang

With the rise of the library ecosystem (such as NPM for JavaScript and PyPI for Python), a developer has access to a multitude of library packages that they can adopt as dependencies into their application.Prior work has found that these…

Software Engineering · Computer Science 2024-07-02 Supatsara Wattanakriengkrai , Christoph Treude , Raula Gaikovina Kula

R packages are the fundamental units of reproducible code in R, providing a mechanism for distributing user-developed code, documentation, and data. Docker is a virtualization technology that allows applications and their dependencies to be…

Quantitative Methods · Quantitative Biology 2023-03-23 V. P. Nagraj , Stephen D. Turner

Different communities rely heavily on software, but use quite different software development practices. {\bf Objective}: We wanted to measure the state of the practice in the area of statistical software for psychology to understand how it…

Software Engineering · Computer Science 2018-02-22 Spencer Smith , Yue Sun , Jacques Carette

Modern programming languages such as Java, JavaScript, and Rust encourage software reuse by hosting diverse and fast-growing repositories of highly interdependent packages (i.e., reusable libraries) for their users. The standard way to…

Software Engineering · Computer Science 2022-06-01 Joseph Hejderup , Moritz Beller , Konstantinos Triantafyllou , Georgios Gousios

Computational reproducibility is fundamental to scientific research, yet many published code supplements lack the necessary documentation to recreate their computational environments. While researchers increasingly share code alongside…

Computers and Society · Computer Science 2025-08-12 Lorraine Saju , Tobias Holtdirk , Meetkumar Pravinbhai Mangroliya , Arnim Bleier

Change in language use is driven by cultural forces; it is unclear whether that extends to programming languages. They are designed to be used by humans, but interaction with computer hardware rather than a human audience may limit…

Programming Languages · Computer Science 2022-08-29 Timothy L Staples

Born in the late 20s, R is one of the most popular software for statistical computing and graphics. With the development of information technology and the advent of the big data era, great changes have taken place in the R ecosystem. Based…

Other Statistics · Statistics 2026-05-19 Tian-Yuan Huang , Zhilan Lou

Developers consistently use version constraints to specify acceptable versions of the dependencies for their project. Pinning dependencies can reduce the likelihood of breaking changes, but comes with a cost of manually managing the…

Software Engineering · Computer Science 2026-05-26 Imranur Rahman , Jill Marley , William Enck , Laurie Williams

R is a robust open-source programming language mainly used for statistical computing . Many areas of statistical research are experiencing rapid growth in the size of data sets. Methodological advances drive increased use of simulations. A…

Programming Languages · Computer Science 2019-04-10 Rahim K. Charania

This paper is motivated by the desire to study package management using the toolkit of the semantics of functional languages. As it transpires, this is deeply related to the semantics of concurrent computation. The models we produce are not…

Logic in Computer Science · Computer Science 2020-04-14 Gershom Bazerman , Raymond Puzio

According to different opponents and commercial giants in software industries, the open source style software development has enough capacity to complete successfully the large scale projects. But we have seen many flaws and loops in…

Software Engineering · Computer Science 2012-02-09 Murtaza Hussain Shaikh

As modern software extensively uses free open source packages as dependencies, developers have to regularly pull in new third-party code through frequent updates. However, without a proper review of every incoming change, vulnerable and…

Software Engineering · Computer Science 2022-11-08 Nasif Imtiaz , Laurie Williams

Industrial applications heavily integrate open-source software libraries nowadays. Beyond the benefits that libraries bring, they can also impose a real threat in case a library is affected by a vulnerability but its community is not active…

Software Engineering · Computer Science 2025-04-24 Alexandros Tsakpinis

This research analyzes complex networks in open-source software at the inter-package level, where package dependencies often span across projects and between development groups. We review complex networks identified at ``lower'' levels of…

Software Engineering · Computer Science 2007-05-23 Nathan LaBelle , Eugene Wallingford

Open source software (OSS) forms the backbone of industrial data workflows and enterprise systems. However, many OSS projects face operational risks due to informal or centralized governance. This paper presents a practical case study of…

Software Engineering · Computer Science 2026-01-21 Pedro Oliveira , Doris Amoakohene , Toby Hocking , Marco Gerosa , Igor Steinmacher