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The combination of persistent homology and discrete Morse theory has proven very effective in visualizing and analyzing big and heterogeneous data. Indeed, topology provides computable and coarse summaries of data independently from…

Computational Geometry · Computer Science 2021-02-12 Claudia Landi , Sara Scaramuccia

In topological data analysis, we want to discern topological and geometric structure of data, and to understand whether or not certain features of data are significant as opposed to simply random noise. While progress has been made on…

Computational Geometry · Computer Science 2020-01-10 So Mang Han , Taylor Okonek , Nikesh Yadav , Xiaojun Zheng

The matching distance is a computationally tractable topological measure to compare multi-filtered simplicial complexes. We design efficient algorithms for approximating the matching distance of two bi-filtered complexes to any desired…

Computational Geometry · Computer Science 2020-04-02 Michael Kerber , Arnur Nigmetov

In this work, we present a generalization of extended persistent homology to filtrations of graded sub-groups by defining relative homology in this setting. Our work provides a more comprehensive and flexible approach to get an algebraic…

Algebraic Topology · Mathematics 2023-11-01 Fang Sun , Shengwen Xie , Xuezhi Zhao

Multi-parameter persistent homology is a recent branch of topological data analysis. In this area, data sets are investigated through the lens of homology with respect to two or more scale parameters. The high computational cost of many…

Algebraic Topology · Mathematics 2020-10-30 Michael Kerber , Alexander Rolle

Topological data analysis (TDA) is a rapidly developing collection of methods for studying the shape of point cloud and other data types. One popular approach, designed to be robust to noise and outliers, is to first use a smoothing…

Methodology · Statistics 2017-12-27 Chul Moon , Noah Giansiracusa , Nicole A. Lazar

Persistent homology has been widely used to study the topology of point clouds in $\mathbb{R}^n$. Standard approaches are very sensitive to outliers, and their computational complexity depends badly on the number of data points. In this…

Algebraic Topology · Mathematics 2022-11-29 Pepijn Roos Hoefgeest , Lucas Slot

We introduce a novel set of observables associated to the rapidly developing field of persistent homology for the quantitative characterization of nuclear collisions and their evolution. Persistent homology allows for the identification of…

Nuclear Theory · Physics 2023-01-04 Greg Hamilton , Travis Dore , Christopher Plumberg

We investigate fully self-consistent multiscale quantum-classical algorithms on current generation superconducting quantum computers, in a unified approach to tackle the correlated electronic structure of large systems in both quantum…

This paper aims to discuss a method of quantifying the 'shape' of data, via a methodology called topological data analysis. The main tool within topological data analysis is persistent homology; this is a means of measuring the shape of…

Algebraic Topology · Mathematics 2022-09-14 Tristan Gowdridge , Nikolaos Devilis , Keith Worden

Persistent homology has been devised as a promising tool for the topological simplification of complex data. However, it is computationally intractable for large data sets. In this work, we introduce multiresolution persistent homology for…

Biomolecules · Quantitative Biology 2015-04-02 Kelin Xia , Zhixiong Zhao , Guo-Wei Wei

The interaction between discrete and continuous mathematics lies at the heart of many fundamental problems in applied mathematics and computational sciences. In this paper we discuss the problem of discretizing vector-valued functions…

Numerical Analysis · Mathematics 2020-05-29 Paweł Dłotko , Thomas Wanner

Let $K$ be a finite simplicial, cubical, delta or CW complex. The persistence map $\mathrm{PH}$ takes a filter $f:K \rightarrow \mathbb{R}$ as input and returns the barcodes $\mathrm{PH}(f)$ of the associated sublevel set persistent…

Computational Geometry · Computer Science 2021-10-29 Jacob Leygonie , Gregory Henselman-Petrusek

We introduce topological conditions on a broad class of functionals that ensure that the persistent homology modules of their associated sublevel set filtration admit persistence diagrams, which, in particular, implies that they satisfy…

Algebraic Topology · Mathematics 2024-01-08 Ulrich Bauer , Anibal M. Medina-Mardones , Maximilian Schmahl

We present a new computing package Flagser, designed to construct the directed flag complex of a finite directed graph, and compute persistent homology for flexibly defined filtrations on the graph and the resulting complex. The persistent…

Algebraic Topology · Mathematics 2019-06-26 Daniel Luetgehetmann , Dejan Govc , Jason Smith , Ran Levi

In this paper, we study further properties and applications of weighted homology and persistent homology. We introduce the Mayer-Vietoris sequence and generalized Bockstein spectral sequence for weighted homology. For applications, we show…

Algebraic Topology · Mathematics 2019-07-17 Shiquan Ren , Chengyuan Wu , Jie Wu

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

In this paper, first we give a sequential linear-time algorithm for the longest path problem in meshes. This algorithm can be considered as an improvement of [13]. Then based on this sequential algorithm, we present a constant-time parallel…

Data Structures and Algorithms · Computer Science 2012-01-24 Fatemeh Keshavarz-Kohjerdi , Alireza Bagheri

In this work we investigate the parallel computation of homology using the Mayer-Vietoris principle. We present a two stage approach for parallelizing persistence. In the first stage, we produce a cover of the input cell complex by…

Computational Geometry · Computer Science 2014-07-10 Ryan H. Lewis , Afra Zomorodian

This thesis addresses the theory of topological spaces and the foundations of persistence theory. We will discuss chain complexes and the associated simplicial homology groups, as well as their relationship with singular homology theory.…

Algebraic Topology · Mathematics 2024-10-14 Luciano Melodia
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