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The sheer amounts of biological data that are generated in recent years have driven the development of network analysis tools to facilitate the interpretation and representation of these data. A fundamental challenge in this domain is the…

Quantitative Methods · Quantitative Biology 2013-07-31 Arnon Mazza , Irit Gat-Viks , Hesso Farhan , Roded Sharan

In this work we address task interference in universal networks by considering that a network is trained on multiple tasks, but performs one task at a time, an approach we refer to as "single-tasking multiple tasks". The network thus…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Kevis-Kokitsi Maninis , Ilija Radosavovic , Iasonas Kokkinos

The large-scale properties of chemical reaction systems, such as the metabolism, can be studied with graph-based methods. To do this, one needs to reduce the information -- lists of chemical reactions -- available in databases. Even for the…

Molecular Networks · Quantitative Biology 2009-09-25 Petter Holme

We study a dynamical system model of an idiotypic immune network with a small number of degrees of freedom, mainly focusing on the effect of a threshold above which antibodies can recognise antibodies. The response of the system to…

Condensed Matter · Physics 2009-11-07 Satoko Itaya , Tatsuya Uezu

This paper continues our previous study on spreading processes in inhomogeneous populations consisting of susceptible and immune individuals [V. Blavatska, Yu. Holovatch, Physica A 573, 125980 (2021)]. A special role in such populations is…

Disordered Systems and Neural Networks · Physics 2022-03-21 V. Blavatska , Yu. Holovatch

Over the last few years, network science has proved to be useful in modeling a variety of complex systems, composed of a large number of interconnected units. The intricate pattern of interactions often allows the system to achieve complex…

Physics and Society · Physics 2024-05-30 Jean-François de Kemmeter , Timoteo Carletti

Dynamic multilayer networks frequently represent the structure of multiple co-evolving relations; however, statistical models are not well-developed for this prevalent network type. Here, we propose a new latent space model for dynamic…

Methodology · Statistics 2021-03-25 Joshua Daniel Loyal , Yuguo Chen

The idea of using multi-task learning approaches to address the joint extraction of entity and relation is motivated by the relatedness between the entity recognition task and the relation classification task. Existing methods using…

Computation and Language · Computer Science 2020-09-18 Kai Sun , Richong Zhang , Samuel Mensah , Yongyi Mao , Xudong Liu

The multitask diffusion LMS is an efficient strategy to simultaneously infer, in a collaborative manner, multiple parameter vectors. Existing works on multitask problems assume that all agents respond to data synchronously. In several…

Systems and Control · Computer Science 2016-08-15 Roula Nassif , Cédric Richard , André Ferrari , Ali H. Sayed

The adaptive immune system of vertebrates can detect, respond to, and memorize diverse pathogens from past experience. While the clonal selection of T helper (Th) cells is the simple and established mechanism to better recognize new…

Populations and Evolution · Quantitative Biology 2021-03-17 Takuya Kato , Tetsuya J. Kobayashi

Meta-population networks are effective tools for capturing population movement across distinct regions, but the assumption of well-mixed regions fails to capture the reality of population higher-order interactions. As a multidimensional…

Physics and Society · Physics 2024-06-18 Yanyi Nie , Yanbing Liu , Qixuan Cao , Tao Lin , Wei Wang

Generative mechanisms which lead to empirically observed structure of networked systems from diverse fields like biology, technology and social sciences form a very important part of study of complex networks. The structure of many…

Physics and Society · Physics 2015-12-03 Snehal M. Shekatkar , G. Ambika

Several approaches to cognition and intelligence research rely on statistics-based models testing, namely factor analysis. In the present work we exploit the emerging dynamical systems perspective putting the focus on the role of the…

Physics and Society · Physics 2018-03-15 Gemma Rosell-Tarragó , Emanuele Cozzo , Albert Díaz-Guilera

Immunizing a subset of nodes in a network - enabling them to identify and withstand the spread of harmful content - is one of the most effective ways to counter the spread of malicious content. It has applications in network security,…

Social and Information Networks · Computer Science 2019-12-30 Muhammad Ahmad , Sarwan Ali , Juvaria Tariq , Imdadullah Khan , Mudassir Shabbir , Arif Zaman

Integrating knowledge across different domains is an essential feature of human learning. Learning paradigms such as transfer learning, meta-learning, and multi-task learning reflect the human learning process by exploiting the prior…

Machine Learning · Computer Science 2024-10-17 Richa Upadhyay , Ronald Phlypo , Rajkumar Saini , Marcus Liwicki

Restricted Boltzmann Machines are key tools in Machine Learning and are described by the energy function of bipartite spin-glasses. From a statistical mechanical perspective, they share the same Gibbs measure of Hopfield networks for…

Mathematical Physics · Physics 2017-08-02 Elena Agliari , Adriano Barra , Chiara Longo , Daniele Tantari

Latent space models are frequently used for modeling single-layer networks and include many popular special cases, such as the stochastic block model and the random dot product graph. However, they are not well-developed for more complex…

Methodology · Statistics 2021-07-09 Peter W. MacDonald , Elizaveta Levina , Ji Zhu

Many components of the IS are constructed as modular units which do not need to communicate with each other such that the number of components increases but the size remains constant. However, a sub-modular IS architecture in which lymph…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-08-18 Soumya Banerjee , Melanie Moses

In order to target threatening pathogens, the adaptive immune system performs a continuous reorganization of its lymphocyte repertoire. Following an immune challenge, the B cell repertoire can evolve cells of increased specificity for the…

Populations and Evolution · Quantitative Biology 2022-03-23 Victor Chardès , Massimo Vergassola , Aleksandra M. Walczak , Thierry Mora

We consider a three-layer Sejnowski machine and show that features learnt via contrastive divergence have a dual representation as patterns in a dense associative memory of order P=4. The latter is known to be able to Hebbian-store an…

Disordered Systems and Neural Networks · Physics 2020-01-22 Elena Agliari , Francesco Alemanno , Adriano Barra , Martino Centonze , Alberto Fachechi