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Optimization networks are a new methodology for holistically solving interrelated problems that have been developed with combinatorial optimization problems in mind. In this contribution we revisit the core principles of optimization…

An algorithm is developed for finding a close to optimal junction tree of a given graph G. The algorithm has a worst case complexity O(c^k n^a) where a and c are constants, n is the number of vertices, and k is the size of the largest…

Data Structures and Algorithms · Computer Science 2013-02-18 Ann Becker , Dan Geiger

Neural Networks and Decision Trees: two popular techniques for supervised learning that are seemingly disconnected in their formulation and optimization method, have recently been combined in a single construct. The connection pivots on…

Machine Learning · Statistics 2020-02-27 Giuseppe Nuti , Lluís Antoni Jiménez Rugama , Kaspar Thommen

We consider the minimum spanning tree problem with predictions, using the weight-arrival model, i.e., the graph is given, together with predictions for the weights of all edges. Then the actual weights arrive one at a time and an…

Data Structures and Algorithms · Computer Science 2023-02-24 Magnus Berg , Joan Boyar , Lene M. Favrholdt , Kim S. Larsen

In this paper we investigate networks whose evolution is governed by the interaction of a random assembly process and an optimization process. In the first process, new nodes are added one at a time and form connections to randomly selected…

Disordered Systems and Neural Networks · Physics 2011-05-16 Markus Brede

This paper addresses the problem of finding a representation of a subtree distance, which is an extension of the tree metric. We show that a minimal representation is uniquely determined by a given subtree distance, and give a linear time…

Data Structures and Algorithms · Computer Science 2019-02-26 Takanori Maehara , Kazutoshi Ando

The paper addresses design/building frameworks for some kinds of tree-like and hierarchical structures of systems. The following approaches are examined: (1) expert-based procedures, (2) hierarchical clustering; (3) spanning problems (e.g.,…

Optimization and Control · Mathematics 2012-12-12 Mark Sh. Levin

Optimal percolation is the problem of finding the minimal set of nodes such that if the members of this set are removed from a network, the network is fragmented into non-extensive disconnected clusters. The solution of the optimal…

Physics and Society · Physics 2018-03-02 Saeed Osat , Ali Faqeeh , Filippo Radicchi

With the tremendous increase of the Internet traffic, achieving the best performance with limited resources is becoming an extremely urgent problem. In order to address this concern, in this paper, we build an optimization problem which…

Physics and Society · Physics 2017-02-23 Li Rui , Xia Yongxiang , Tse K Chi

A recent work shows how we can optimize a tree based mode of operation for a rate 1 hash function. In particular, an algorithm and a theorem are presented for selecting a good tree topology in order to optimize both the running time and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-15 Kevin Atighehchi

We consider the problem of constructing an an optimal-weight tree from the 3*(n choose 4) weighted quartet topologies on n objects, where optimality means that the summed weight of the embedded quartet topologiesis optimal (so it can be the…

Data Structures and Algorithms · Computer Science 2011-11-09 Rudi Cilibrasi , Paul M. B. Vitanyi

Designing well-connected graphs is a fundamental problem that frequently arises in various contexts across science and engineering. The weighted number of spanning trees, as a connectivity measure, emerges in numerous problems and plays a…

Data Structures and Algorithms · Computer Science 2016-04-13 Kasra Khosoussi , Gaurav S. Sukhatme , Shoudong Huang , Gamini Dissanayake

The dynamical processes taking place on a network depend on its topology. Influencing the growth process of a network therefore has important implications on such dynamical processes. We formulate the problem of influencing the growth of a…

Social and Information Networks · Computer Science 2016-12-28 Dominik Thalmeier , Vicenç Gómez , Hilbert J. Kappen

The currently most efficient algorithm for inference with a probabilistic network builds upon a triangulation of a network's graph. In this paper, we show that pre-processing can help in finding good triangulations forprobabilistic…

Artificial Intelligence · Computer Science 2013-01-14 Hans L. Bodlaender , Arie M. C. A. Koster , Frank van den Eijkhof , Linda C. van der Gaag

In this article we consider networks, which for a given time period can have one link broken. Which new link should we build so the closeness of the resulting network satisfies some optimal criteria? We consider different criteria for…

Discrete Mathematics · Computer Science 2026-03-17 Chavdar Dangalchev

The problem of {\em efficiently} finding the best match for a query in a given set with respect to the Euclidean distance or the cosine similarity has been extensively studied in literature. However, a closely related problem of efficiently…

Computational Geometry · Computer Science 2021-06-24 Parikshit Ram , Alexander G. Gray

Supertree construction is the process by which a set of phylogenetic trees, each on a subset of the overall set X of species, is combined into a tree on the full set S. The traditional use of supertree methods is the assembly of a large…

Populations and Evolution · Quantitative Biology 2018-05-10 Tandy Warnow

Tensors are a natural way to express correlations among many physical variables, but storing tensors in a computer naively requires memory which scales exponentially in the rank of the tensor. This is not optimal, as the required memory is…

Computational Physics · Physics 2018-12-03 Adam S. Jermyn

One of the key problems in tensor network based quantum circuit simulation is the construction of a contraction tree which minimizes the cost of the simulation, where the cost can be expressed in the number of operations as a proxy for the…

Quantum Physics · Physics 2022-09-08 Cameron Ibrahim , Danylo Lykov , Zichang He , Yuri Alexeev , Ilya Safro

We describe a technique to reorganize topologies of Steiner trees by exchanging neighbors of adjacent Steiner points. We explain how to use the systematic way of building trees, and therefore topologies, to find the correct topology after…

Data Structures and Algorithms · Computer Science 2018-03-13 Aymeric Grodet , Takuya Tsuchiya