English
Related papers

Related papers: Imaging Hydrogen Bond in Real Space

200 papers

The toolbox for imaging molecules is well-equipped today. Some techniques visualize the geometrical structure, others the electron density or electron orbitals. Molecules are many-body systems for which the correlation between the…

Hydrogen bonding interactions between biological chromophores and their surrounding protein and solvent environment significantly affect the photochemical pathways of the chromophore and its biological function. A common first step in the…

Chemical Physics · Physics 2017-12-18 D. A. Horke , H. M. Watts , A. D. Smith , E. Jager , E. Springate , O. Alexander , C. Cacho , R. T. Chapman , R. S. Minns

Scanning tunneling microscopy (STM) has been a fundamental tool to characterize many-body effects in condensed matter systems, from extended solids to quantum dots. STM of molecules decoupled from the supporting conductive substrate has the…

Mesoscale and Nanoscale Physics · Physics 2011-01-14 Dimitrios Toroz , Massimo Rontani , Stefano Corni

We describe the atomic-level motions in caesium hydroxide monohydrate (CsOH$\cdot$H$_2$O), which is a chemical compound containing layers of water and hydroxide ions. At this composition, each oxygen is involved in three hydrogen bonds…

Materials Science · Physics 2026-05-05 Graeme J. Ackland , Ciprian G. Pruteanu , John S. Loveday , Keishiro Yamashita

At the fundamental level, our understanding of water hydrogen-bond dynamics has been largely built on the detailed analysis of classical molecular simulations. The latter served to develop a plethora of hydrogen bond definitions based on…

Chemical Physics · Physics 2013-08-06 Diego Prada-Gracia , Francesco Rao

It is commonly believed that it is unfavourable for adsorbed H atoms on carbonaceous surfaces to form H$_2$ without the help of incident H atoms. Using ring-polymer instanton theory to describe multidimensional tunnelling effects, combined…

Chemical Physics · Physics 2022-04-05 Erxun Han , Wei Fang , Michail Stamatakis , Jeremy O. Richardson , Ji Chen

Using the molecular dynamics method, dynamics of hydrogen bond (HB) networks emerging on the surface of a graphene sheet during its functionalization with hydroxyl groups OH are simulated. It is demonstrated that two OH groups form an…

Mesoscale and Nanoscale Physics · Physics 2020-12-30 Alexander V. Savin

Our curiosity-driven desire to "see" chemical bonds dates back at least one-hundred years, perhaps to antiquity. Sweeping improvements in the accuracy of measured and predicted electron charge densities, alongside our largely bondcentric…

Chemical Physics · Physics 2020-02-19 Timothy R. Wilson , Malavikha Rajivmoorthy , Jordan Goss , Sam Riddle , M. E. Eberhart

Four scenarios have been proposed for the low--temperature phase behavior of liquid water, each predicting different thermodynamics. The physical mechanism which leads to each is debated. Moreover, it is still unclear which of the scenarios…

Soft Condensed Matter · Physics 2009-08-27 Kevin Stokely , Marco G. Mazza , H. Eugene Stanley , Giancarlo Franzese

Water, a ubiquitous and fundamental substance, plays a critical role across a wide range of disciplines from physics and chemistry to biology and engineering. Despite theoretical predictions of several phases of two-dimensional (2D) ice…

Materials Science · Physics 2025-10-10 Bingzheng Wu , Jianming Wu , Sai Duan , Xin Xu

Halogen bonding has emerged as an important noncovalent interaction in a myriad of applications, including drug design, supramolecular assembly, and catalysis. Current understanding of the halogen bond is informed by electronic structure…

Chemical Physics · Physics 2019-05-23 Richard C. Remsing , Michael L. Klein

An H atom inserted into hydrogen monolayer on the Si(100)-2x1 surface has been studied using the density functional theory. Hydrogen-induced defects were considered in their neutral, negative, and positive charge states. It was found that…

Mesoscale and Nanoscale Physics · Physics 2020-10-28 T. V. Pavlova

Many experimental techniques such as tagging photodissociation and helium nanodroplet isolation spectroscopy operate at very low temperatures in order to investigate hydrogen bonding. To elucidate the differences between such ultra-cold and…

Chemical Physics · Physics 2019-11-22 Christoph Schran , Dominik Marx

Metallic hydrogen is the most common condensed material in the universe, comprising the centre of gas giant planets. However, experimental studies are extremely challenging, and most of our understanding of this material has been led by…

Materials Science · Physics 2024-11-12 Jakkapat Seeyangnok , Udomsilp Pinsook , Graeme John Ackland

We present a probabilistic approach to water-water hydrogen bonding that allows one to obtain an analytic expression for the number of bonds per water molecule as a function of both its distance to a hydrophobic particle and hydrophobe…

Soft Condensed Matter · Physics 2013-03-20 Yuri S. Djikaev , Eli Ruckenstein

We develop a graph-based model of the hydrogen bond network in water, with a view towards quantitatively modeling the molecular-level correlational structure of the network. The networks are formed are studied by the constructing the model…

Statistical Mechanics · Physics 2018-06-19 Rahul Dandekar , Ali A. Hassanali

We study water between parallel metal walls under applied electric field accounting for the image effect at $T=298$ K. The electric field due to the surface charges serves to attract and orient nearby water molecules, while it tends to a…

Soft Condensed Matter · Physics 2015-07-24 Kyohei Takae , Akira Onuki

Monte Carlo computer simulations in the canonical and grand canonical statistical ensemble were used to explore the properties of the central force (CF1) water model. The intramolecular structure of the H$_2$O molecule is well reproduced by…

Soft Condensed Matter · Physics 2021-10-12 V. Ravnik , B. Hribar-Lee , O. Pizio , M. Luksic

Scanning tunneling microscopy (STM) provides real-space electronic state information at the atomic scale that is most commonly used to study materials surfaces. An intriguing extension of the method is attempt to study the electronic…

Materials Science · Physics 2015-06-22 Andrei Malashevich , Eric I. Altman , Sohrab Ismail-Beigi

Oxide heterostructures are a new class of materials by design, that open the possibility for engineering challenging electronic properties, in particular correlation effects beyond an effective single-particle description. This short review…

Materials Science · Physics 2018-08-24 Frank Lechermann