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It is suggested that the degree distribution for networks of the cell-metabolism for simple organisms reflects an ubiquitous randomness. This implies that natural selection has exerted no or very little pressure on the network degree…

Biological Physics · Physics 2008-03-05 Petter Minnhagen , Sebastian Bernhardsson

Connectivity (or equivalently, unweighted maximum flow) is an important measure in graph theory and combinatorial optimization. Given a graph $G$ with vertices $s$ and $t$, the connectivity $\lambda(s,t)$ from $s$ to $t$ is defined to be…

Data Structures and Algorithms · Computer Science 2024-12-25 Shyan Akmal

We review the main tools which allow for the statistical characterization of weighted networks. We then present two case studies, the airline connection network and the scientific collaboration network, which are representative of critical…

Statistical Mechanics · Physics 2009-11-10 Marc Barthelemy , Alain Barrat , Romualdo Pastor-Satorras , Alessandro Vespignani

The law of allometric growth originated from biology has been widely used in urban research for a long time. Some conditional research conclusions based on biological phenomena have been erroneously transmitted in the field of urban…

Physics and Society · Physics 2025-02-28 Yanguang Chen

The origin of allometric scaling of metabolic rate is a long-standing question in biology. Several models have been proposed for explaining the origin; however, they have advantages and disadvantages. In particular, previous models only…

Other Quantitative Biology · Quantitative Biology 2015-02-23 Kazuhiro Takemoto

The quarter power allometric scaling of mammalian metabolic rate is largely regarded as a universal law of biology. However, it is well known that cell cultures do not obey this law. The current thinking is that were in-vitro cultures to…

Tissues and Organs · Quantitative Biology 2017-01-23 Arti Ahluwalia

Ecology studies biodiversity in its variety and complexity. It describes how species distribute and perform in response to environmental changes. Ecological processes and structures are highly complex and adaptive. In order to quantify…

Populations and Evolution · Quantitative Biology 2013-10-09 Cang Hui

Network theory is rapidly changing our understanding of complex systems, but the relevance of topological features for the dynamic behavior of metabolic networks, food webs, production systems, information networks, or cascade failures of…

Disordered Systems and Neural Networks · Physics 2007-05-23 Dirk Helbing , Ulrich Witt , Stefan Laemmer , Thomas Brenner

We consider the role of network geometry in two types of diffusion processes: transport of constant-density information packets with queuing on nodes, and constant voltage-driven tunneling of electrons. The underlying network is a…

Statistical Mechanics · Physics 2010-10-05 Milovan Suvakov , Bosiljka Tadic

The study of complex systems has captured widespread attention in recent years, emphasizing the exploration of interactions and emergent properties among system units. Network analysis based on graph theory has emerged as a powerful…

Applications · Statistics 2025-05-08 Shuang Wu , Mengmeng Zhang

Allometric growth is found in many tagging systems online. That is, the number of new tags (T) is a power law function of the active population (P), or T P^gamma (gamma!=1). According to previous studies, it is the heterogeneity in…

Information Retrieval · Computer Science 2012-01-31 Lingfei Wu , Chengjun Wang

Unlike many physical nonequilibrium systems, in biological systems, the coupling to external energy sources is not a fixed parameter but adaptively controlled by the system itself. We do not have theoretical frameworks that allow for such…

Populations and Evolution · Quantitative Biology 2025-06-30 Ankit Dhanuka , Avi I. Flamholz , Arvind Murugan , Akshit Goyal

Understanding conformational change is crucial for programming and controlling the function of many mechanical systems such as allosteric enzymes and tunable metamaterials. Of particular interest is the relationship between the network…

Computational Physics · Physics 2019-07-24 Jason Z. Kim , Zhixin Lu , Steven H. Strogatz , Danielle S. Bassett

Network science provides an indispensable theoretical framework for studying the structure and function of real complex systems. Different network models are often used for finding the rules that govern their evolution, whereby the correct…

Physics and Society · Physics 2020-09-02 Ana Vranić , Marija Mitrović Dankulov

Highly-diverse ecosystems exhibit a broad distribution of population sizes and species turnover, where species at high and low abundances are exchanged over time. We show that these two features generically emerge in the fluctuating phase…

Populations and Evolution · Quantitative Biology 2024-01-09 Thibaut Arnoulx de Pirey , Guy Bunin

Complex networks are characterized by latent geometries induced by their topology or by the dynamics on the top of them. In the latter case, different network-driven processes induce distinct geometric features that can be captured by…

Physics and Society · Physics 2021-04-07 Giulia Bertagnolli , Manlio De Domenico

Many transport processes on networks depend crucially on the underlying network geometry, although the exact relationship between the structure of the network and the properties of transport processes remain elusive. In this paper we…

Physics and Society · Physics 2015-06-26 Bosiljka Tadic , G. J. Rodgers , Stefan Thurner

Many social, technological, biological, and economical systems are best described by weighted networks, whose properties and dynamics depend not only on their structures but also on the connection weights among their nodes. However, most…

Disordered Systems and Neural Networks · Physics 2015-06-24 Chunguang Li , Guanrong Chen

For most technical networks, the interplay of dynamics, traffic and topology is assumed crucial to their evolution. In this paper, we propose a traffic-driven evolution model of weighted technological networks. By introducing a general…

Disordered Systems and Neural Networks · Physics 2009-11-11 Wen-Xu Wang , Bo Hu , Gang Yan , Qing Ou , Bing-Hong Wang

Heterogeneity is a key aspect of complex networks, often emerging by looking at the distribution of node properties, from the milestone observations on the degree to the recent developments in mixing pattern estimation. Mixing patterns, in…

Social and Information Networks · Computer Science 2021-12-01 Salvatore Citraro , Letizia Milli , Rémy Cazabet , Giulio Rossetti