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Related papers: Comment on "Steady-state fluctuations of a genetic…

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Genetic feedback loops in cells break detailed balance and involve bimolecular reactions; hence exact solutions revealing the nature of the stochastic fluctuations in these loops are lacking. We here consider the master equation for a gene…

Subcellular Processes · Quantitative Biology 2015-06-05 R. Grima , D. R. Schmidt , T. J. Newman

Reply to the comment, cond-mat/0209398 by by N.W. Watkins, S.C. Chapman, and G. Rowlands

Stochasticity in gene expression can result in fluctuations in gene product levels. Recent experiments indicated that feedback regulation plays an important role in controlling the noise in gene expression. A quantitative understanding of…

Molecular Networks · Quantitative Biology 2019-12-11 Zihao Wang , Zhenquan Zhang , Tianshou Zhou

This is a Comment on "Universal Fluctuations in Correlated Systems".

Statistical Mechanics · Physics 2009-11-07 B. Zheng , S. Trimper

This comment is devoted to the paper "Exact solutions of nonlinear diffusion-convection-reaction equation: A Lie symmetry approach" (CNSNS, vol. 67 (2019), 253-263) in which several results are not new because were derived much earlier.…

Analysis of PDEs · Mathematics 2021-06-29 Roman Cherniha

Stochastic kinetic models of genetic expression are able to describe protein fluctuations. A comparative study of the canonical and a feedback model is given here by using stochastic simulation methods. The feedback model is skeleton model…

Molecular Networks · Quantitative Biology 2018-09-06 Raoul R. Wadhwa , Laszlo Zalanyi , Judit Szente , Laszlo Negyessy , Peter Erdi

The various versions of cond-mat/0312353 discuss results obtained by me&coworkers in the last decade. I have received requests to comment on the paper and the comments are collected here, including some that I tried to point in the course…

Statistical Mechanics · Physics 2007-05-23 Giovanni Gallavotti

This is a comment on "Universal Fluctuations in Correlated Systems", by Bramwell et al, Phys. Rev. Lett., 84, 3744 (2000.

Statistical Mechanics · Physics 2016-08-31 N. W. Watkins , S. C. Chapman , G. Rowlands

Understanding the relationship between spontaneous stochastic fluctuations and the topology of the underlying gene regulatory network is of fundamental importance for the study of single-cell stochastic gene expression. Here by solving the…

Molecular Networks · Quantitative Biology 2017-10-25 Chen Jia , Peng Xie , Min Chen , Michael Q. Zhang

Comment on "Quantifying the Fraction of Missing Information for Hypothesis Testing in Statistical and Genetic Studies" [arXiv:1102.2774]

Methodology · Statistics 2011-02-16 Tian Zheng , Shaw-Hwa Lo

Comment on "Quantifying the Fraction of Missing Information for Hypothesis Testing in Statistical and Genetic Studies" [arXiv:1102.2774]

Methodology · Statistics 2011-02-16 I-Shou Chang , Chung-Hsing Chen , Li-Chu Chien , Chao A. Hsiung

This is a reply to the paper by S.C.Benjamin, quant-ph/0008127.

Quantum Physics · Physics 2009-11-06 Luca Marinatto , Tullio Weber

We provide a reply to a comment by I. Goychuk arXiv:1708.04155, version v2 from 27 Aug 2017 (not under active consideration with Phys. Rev. Lett.), on our Letter E. Aghion, D. A. Kessler and E. Barkai, Phys. Rev. Lett., 118, 260601 (2017).

Statistical Mechanics · Physics 2017-10-17 Erez Aghion , David A. Kessler , Eli Barkai

Comment on R. Planet, S. Santucci, J. Ortin, Phys. Rev. Lett. 102, 094502 (2009) about the rescaling of the data and the data collapse. Reply to be found here.

Statistical Mechanics · Physics 2015-05-19 Gunnar Pruessner

Auto-regulatory feedback loops are one of the most common network motifs. A wide variety of stochastic models have been constructed to understand how the fluctuations in protein numbers in these loops are influenced by the kinetic…

Subcellular Processes · Quantitative Biology 2020-04-22 James Holehouse , Zhixing Cao , Ramon Grima

The Comments are devoted to the paper ``Solutions of Multitime Reaction-Diffusion PDE'' (Mathematics, vol. 10 (2022), 3623), in which main results are misleading and can be derived in a simple way from those obtained earlier. Moreover, it…

Analysis of PDEs · Mathematics 2023-02-27 Roman Cherniha

A brief comment on A variational Bayesian approach for inverse problems with skew-t error distributions (Guha et al., Journal of Computational Physics 301 (2015) 377-393) is given in this letter.

Methodology · Statistics 2016-11-24 Javier E. Contreras-Reyes , Freddy Omar López Quintero

Stochasticity in gene expression can give rise to fluctuations in protein levels and lead to phenotypic variation across a population of genetically identical cells. Recent experiments indicate that bursting and feedback mechanisms play…

Molecular Networks · Quantitative Biology 2015-06-22 Niraj Kumar , Thierry Platini , Rahul V. Kulkarni

This is a comment on [G. Knight and R. Klages, Phys. Rev. E 84, 041135 (2011); also available at arXiv:1107.5293v2 [math-ph]].

Statistical Mechanics · Physics 2011-11-29 Thomas Gilbert , David P. Sanders

After the rejection of their comment [arXiv:cond-mat/0609399v1] to our Phys. Rev. Lett. {\bf 97}, 100601 (2006), the Authors informed us that an extended version of their comment is going to be published in a different journal under the…

Statistical Mechanics · Physics 2007-05-23 Fulvio Baldovin , Enzo Orlandini
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