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Currently, data-driven discovery in biological sciences resides in finding segmentation strategies in multivariate data that produce sensible descriptions of the data. Clustering is but one of several approaches and sometimes falls short…

Quantitative Methods · Quantitative Biology 2022-08-12 Richard Tjörnhammar

Many clustering methods, including k-means, require the user to specify the number of clusters as an input parameter. A variety of methods have been devised to choose the number of clusters automatically, but they often rely on strong…

Methodology · Statistics 2017-02-10 Wei Fu , Patrick O. Perry

Spectral clustering refers to a family of unsupervised learning algorithms that compute a spectral embedding of the original data based on the eigenvectors of a similarity graph. This non-linear transformation of the data is both the key of…

Machine Learning · Computer Science 2019-01-30 Nicolas Tremblay , Andreas Loukas

Fair clustering is the process of grouping similar entities together, while satisfying a mathematically well-defined fairness metric as a constraint. Due to the practical challenges in precise model specification, the prescribed fairness…

Machine Learning · Statistics 2021-02-09 Sainyam Galhotra , Sandhya Saisubramanian , Shlomo Zilberstein

Biclustering is an unsupervised data mining technique that aims to unveil patterns (biclusters) from gene expression data matrices. In the framework of this thesis, we propose new biclustering algorithms for microarray data. The latter is…

Machine Learning · Computer Science 2018-11-26 Amina Houari

This paper proposes a centroid-based clustering algorithm which is capable of clustering data-points with n-features, without having to specify the number of clusters to be formed. The core logic behind the algorithm is a similarity…

Machine Learning · Computer Science 2020-10-08 Rabindra Lamsal , Shubham Katiyar

We explore the utility of clustering in reducing error in various prediction tasks. Previous work has hinted at the improvement in prediction accuracy attributed to clustering algorithms if used to pre-process the data. In this work we more…

Machine Learning · Computer Science 2015-09-22 Shubhendu Trivedi , Zachary A. Pardos , Neil T. Heffernan

We study the problem of graph partitioning, or clustering, in sparse networks with prior information about the clusters. Specifically, we assume that for a fraction $\rho$ of the nodes their true cluster assignments are known in advance.…

Physics and Society · Physics 2010-10-06 Armen E. Allahverdyan , Greg Ver Steeg , Aram Galstyan

Clustering provides a common means of identifying structure in complex data, and there is renewed interest in clustering as a tool for the analysis of large data sets in many fields. A natural question is how many clusters are appropriate…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Susanne Still , William Bialek

This work addresses the intrinsic relationship between trees and networks (i.e. graphs). A complete (invertible) mapping is presented which allows trees to be mapped into weighted graphs and then backmapped into the original tree without…

Physics and Society · Physics 2008-08-07 Luciano da Fontoura Costa , Francisco Aparecido Rodrigues

Despite the success of convolution- and attention-based models in vision tasks, their rigid receptive fields and complex architectures limit their ability to model irregular spatial patterns and hinder interpretability, therefore posing…

Computer Vision and Pattern Recognition · Computer Science 2025-12-22 Xiangshuai Song , Jun-Jie Huang , Tianrui Liu , Ke Liang , Chang Tang

Hierarchical Clustering has been studied and used extensively as a method for analysis of data. More recently, Dasgupta [2016] defined a precise objective function. Given a set of $n$ data points with a weight function $w_{i,j}$ for each…

Data Structures and Algorithms · Computer Science 2021-11-15 Mirmahdi Rahgoshay , Mohammad R. Salavatipour

Grouping the nodes of a graph into clusters is a standard technique for studying networks. We study a problem where we are given a directed network and are asked to partition the graph into a sequence of coherent groups. We assume that…

Social and Information Networks · Computer Science 2025-12-08 Iiro Kumpulainen , Nikolaj Tatti

A major limitation of clustering approaches is their lack of explainability: methods rarely provide insight into which features drive the grouping of similar observations. To address this limitation, we propose an ensemble-based clustering…

Machine Learning · Statistics 2026-03-23 Federico Maria Quetti , Elena Ballante , Silvia Figini , Paolo Giudici

Data clustering is an approach to seek for structure in sets of complex data, i.e., sets of "objects". The main objective is to identify groups of objects which are similar to each other, e.g., for classification. Here, an introduction to…

Data Analysis, Statistics and Probability · Physics 2016-02-17 Alexander K. Hartmann

We propose a multi-phase approach to explore network structures. In this method, structure analysis is not carried out on the observed network directly. Instead, certain similarity measures of the nodes are derived from the network firstly,…

Physics and Society · Physics 2009-07-03 Xiaofeng Gong , Shuguang Guan , C. -H. Lai

Text Clustering is a text mining technique which divides the given set of text documents into significant clusters. It is used for organizing a huge number of text documents into a well-organized form. In the majority of the clustering…

Information Retrieval · Computer Science 2015-03-12 G. Hannah Grace , Kalyani Desikan

Face clustering is an essential tool for exploiting the unlabeled face data, and has a wide range of applications including face annotation and retrieval. Recent works show that supervised clustering can result in noticeable performance…

Computer Vision and Pattern Recognition · Computer Science 2020-04-06 Lei Yang , Dapeng Chen , Xiaohang Zhan , Rui Zhao , Chen Change Loy , Dahua Lin

Classification and clustering have been studied separately in machine learning and computer vision. Inspired by the recent success of deep learning models in solving various vision problems (e.g., object recognition, semantic segmentation)…

Machine Learning · Computer Science 2017-12-13 Ali Borji , Aysegul Dundar

We propose a new clustering approach, called optimality-based clustering, that clusters data points based on their latent decision-making preferences. We assume that each data point is a decision generated by a decision-maker who…

Optimization and Control · Mathematics 2022-02-15 Zahed Shahmoradi , Taewoo Lee
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