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We consider the $k$-prize-collecting Steiner tree problem. An instance is composed of an integer $k$ and a graph $G$ with costs on edges and penalties on vertices. The objective is to find a tree spanning at least $k$ vertices which…

Computational Complexity · Computer Science 2019-11-22 Lehilton Lelis Chaves Pedrosa , Hugo Kooki Kasuya Rosado

The paper deals with optimality issues in connection with updating beliefs in networks. We address two processes: triangulation and construction of junction trees. In the first part, we give a simple algorithm for constructing an optimal…

Artificial Intelligence · Computer Science 2013-02-28 Finn Verner Jensen , Frank Jensen

Given a directed graph $G$ on $n$ vertices with a special vertex $s$, the directed minimum degree spanning tree problem requires computing a incoming spanning tree rooted at $s$ whose maximum tree in-degree is the smallest among all such…

Data Structures and Algorithms · Computer Science 2019-05-28 Ran Duan , Tianyi Zhang

The clique tree algorithm is the standard method for doing inference in Bayesian networks. It works by manipulating clique potentials - distributions over the variables in a clique. While this approach works well for many networks, it is…

Artificial Intelligence · Computer Science 2013-01-30 Daphne Koller , Uri Lerner , Dragomir Anguelov

A tree $t$-spanner $T$ of a graph $G$ is a spanning tree of $G$ such that the distance in $T$ between every pair of verices is at most $t$ times the distance in $G$ between them. There are efficient algorithms that find a tree $t\cdot…

Computational Complexity · Computer Science 2016-04-19 Ioannis Papoutsakis

Mining cohesive subgraphs from a graph is a fundamental problem in graph data analysis. One notable cohesive structure is $\gamma$-quasi-clique (QC), where each vertex connects at least a fraction $\gamma$ of the other vertices inside.…

Databases · Computer Science 2023-08-29 Kaiqiang Yu , Cheng Long

The Quantum Approximate Optimization Algorithm can be applied to search problems on graphs with a cost function that is a sum of terms corresponding to the edges. When conjugating an edge term, the QAOA unitary at depth p produces an…

Quantum Physics · Physics 2020-05-19 Edward Farhi , David Gamarnik , Sam Gutmann

The treedepth of a graph $G$ is the least possible depth of an elimination forest of $G$: a rooted forest on the same vertex set where every pair of vertices adjacent in $G$ is bound by the ancestor/descendant relation. We propose an…

Data Structures and Algorithms · Computer Science 2022-05-06 Wojciech Nadara , Michał Pilipczuk , Marcin Smulewicz

Two kinds of approximation algorithms exist for the k-BALANCED PARTITIONING problem: those that are fast but compute unsatisfying approximation ratios, and those that guarantee high quality ratios but are slow. In this paper we prove that…

Computational Complexity · Computer Science 2019-04-29 Andreas Emil Feldmann

The following optimal stopping problem is considered. The vertices of a graph $G$ are revealed one by one, in a random order, to a selector. He aims to stop this process at a time $t$ that maximizes the expected number of connected…

Combinatorics · Mathematics 2021-10-05 Fabrício Siqueira Benevides , Małgorzata Sulkowska

The Steiner tree problem aims to determine a minimum edge-weighted tree that spans a given set of terminal vertices from a given graph. In the past decade, a considerable number of algorithms have been developed to solve this…

Data Structures and Algorithms · Computer Science 2024-08-23 Ming Sun , Xinyu Wu , Yi Zhou , Jin-Kao Hao , Zhang-Hua Fu

We study the Minimum Crossing Number problem: given an $n$-vertex graph $G$, the goal is to find a drawing of $G$ in the plane with minimum number of edge crossings. This is one of the central problems in topological graph theory, that has…

Data Structures and Algorithms · Computer Science 2010-12-02 Julia Chuzhoy

The problem of constructing optimal factoring automata arises in the context of unification factoring for the efficient execution of logic programs. Given an ordered set of $n$ strings of length $m$, the problem is to construct a trie-like…

Data Structures and Algorithms · Computer Science 2024-04-04 Thomas Erlebach , Kleitos Papadopoulos

A $k$-defective clique is a relaxation of the traditional clique definition, allowing up to $k$ missing edges. This relaxation is crucial in various real-world applications such as link prediction, community detection, and social network…

Data Structures and Algorithms · Computer Science 2025-12-12 Jihoon Jang , Yehyun Nam , Kunsoo Park , Hyunjoon Kim

THIS IS A CORRECTED VERSION INCLUDING AN APPENDED CORRIGENDUM. Best match graphs arise naturally as the first processing intermediate in algorithms for orthology detection. Let $T$ be a phylogenetic (gene) tree $T$ and $\sigma$ an…

Listing dense subgraphs in large graphs plays a key task in varieties of network analysis applications like community detection. Clique, as the densest model, has been widely investigated. However, in practice, communities rarely form as…

Data Structures and Algorithms · Computer Science 2022-02-22 Zhengren Wang , Yi Zhou , Mingyu Xiao , Bakhadyr Khoussainov

We describe a polynomial-time algorithm which, given a graph $G$ with treewidth $t$, approximates the pathwidth of $G$ to within a ratio of $O(t\sqrt{\log t})$. This is the first algorithm to achieve an $f(t)$-approximation for some…

Data Structures and Algorithms · Computer Science 2023-03-13 Carla Groenland , Gwenaël Joret , Wojciech Nadara , Bartosz Walczak

While well-known methods to list the intersections of either a list of segments or a complex polygon aim at achieving optimal time-complexity they often do so at the cost of memory comsumption and complex code. Real-life software…

Computational Geometry · Computer Science 2013-05-28 Jean Souviron

We are given a graph $G$ with $n$ vertices, where a random subset of $k$ vertices has been made into a clique, and the remaining edges are chosen independently with probability $\tfrac12$. This random graph model is denoted…

Combinatorics · Mathematics 2010-10-15 Yael Dekel , Ori Gurel-Gurevich , Yuval Peres

We consider problems that can be formulated as a task of finding an optimal triangulation of a graph w.r.t. some notion of optimality. We present algorithms parameterized by the size of a minimum edge clique cover ($cc$) to such problems.…

Data Structures and Algorithms · Computer Science 2022-02-08 Tuukka Korhonen