Related papers: Serverification of Molecular Modeling Applications…
Since their introduction over two decades ago, side-channel attacks have presented a serious security threat. While many ciphers' implementations employ masking techniques to protect against such attacks, they often leak secret information…
The increasing availability of geospatial foundation models has the potential to transform remote sensing applications such as land cover classification, environmental monitoring, and change detection. Despite promising benchmark results,…
Advances in foundation modeling have reshaped computational pathology. However, the increasing number of available models and lack of standardized benchmarks make it increasingly complex to assess their strengths, limitations, and potential…
Context: Most approaches to automated white-box testing consider the client side and the server side of a web application in isolation from each other. Such testers lack a whole-program perspective on the web application under test.…
Reusing and making sense of other scientists' computational notebooks. However, making sense of existing notebooks is a struggle, as these reference notebooks are often exploratory, have messy structures, include multiple alternatives, and…
Summary: The development of automated servers to predict the three-dimensional structure of proteins has seen much progress over the years. These servers make modeling simpler, but largely exclude users from the process. We present an…
Serverless computing is an emerging cloud computing paradigm, being adopted to develop a wide range of software applications. It allows developers to focus on the application logic in the granularity of function, thereby freeing developers…
The increasing popularity of machine learning solutions puts increasing restrictions on this field if it is to penetrate more aspects of life. In particular, energy efficiency and speed of operation is crucial, inter alia in portable…
The generation of high-quality assemblies, even for large eukaryotic genomes, has become a routine task for many biologists thanks to recent advances in sequencing technologies. However, the annotation of these assemblies - a crucial step…
The trend toward open science increases the pressure on authors to provide access to the source code and data they used to compute the results reported in their scientific papers. Since sharing materials reproducibly is challenging, several…
Developing socially competent robots requires tight integration of robotics, computer vision, speech processing, and web technologies. We present the Socially-interactive Robot Software platform (SROS), an open-source framework addressing…
Application development in the Internet of Things (IoT) is challenging because it involves dealing with issues that attribute to different life-cycle phases. First, the application logic has to be analyzed and then separated into a set of…
Summary: In anticipation of the individualized proteomics era and the need to integrate knowledge from disease studies, we have augmented our peptide identification software RAId DbS to take into account annotated single amino acid…
We propose Sliceable Monolith, a new methodology for developing microservice architectures and perform their integration testing by leveraging most of the simplicity of a monolith: a single codebase and a local execution environment that…
Model training requires significantly more memory, compared with inference. Parameter efficient fine-tuning (PEFT) methods provide a means of adapting large models to downstream tasks using less memory. However, existing methods such as…
Robotics is incredibly fun and is long recognized as a great way to teach programming, while drawing inspiring connections to other branches of engineering and science such as maths, physics or electronics. Although this symbiotic…
Biochemical reaction models describing subcellular processes generally come with a large uncertainty. To be able to account for this during the modeling process, we have developed the R-package UQSA, performing uncertainty quantification…
Predicting protein 3D structure from amino acid sequence remains as a challenge in the field of computational biology. If protein structure homologues are not found, one has to construct 3D structural conformations from the very beginning…
A computational tool, Omnisoot, was developed utilizing the chemical kinetics capabilities of Cantera to model the formation of carbonaceous nanoparticles, such as soot and Carbon Black (CB), from the reactions of gaseous hydrocarbons.…
In this work, we introduce iviz, a mobile application for visualizing ROS data. In the last few years, the popularity of ROS has grown enormously, making it the standard platform for open source robotic programming. A key reason for this…