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Periodic forcing of nonlinear oscillators leads to a large number of dynamic behaviors. The coupling of the cell-cycle to the circadian clock provides a biological realization of such forcing. Using high throughput single-cell microscopy,…

Let $B{ aut}_1X$ be the Dold-Lashof classifying space of orientable fibrations with fiber $X$. For a rationally weakly trivial map $f:X\to Y$, our strictly induced map $a_f: (Baut_1X)_0\to (Baut_1Y)_0$ induces a natural map from a…

We present a bijective proof for the planar case of Louf's counting formula on bipartite planar maps with prescribed face degree, that arises from the Toda hierarchy. We actually show that his formula hides two simpler formulas, both of…

Plane increasing trees are rooted labeled trees embedded into the plane such that the sequence of labels is increasing on any branch starting at the root. Relaxed binary trees are a subclass of unlabeled directed acyclic graphs. We…

The study of bipartite maps (or Grothendieck's dessins d'enfants) is closely connected with geometry, mathematical physics and free probability. Here we study these objects from their permutation factorization formulation using a novel…

An elimination tree for a connected graph $G$ is a rooted tree on the vertices of $G$ obtained by choosing a root $x$ and recursing on the connected components of $G-x$ to produce the subtrees of $x$. Elimination trees appear in many guises…

In some bicategories, the 1-cells are `morphisms' between the 0-cells, such as functors between categories, but in others they are `objects' over the 0-cells, such as bimodules, spans, distributors, or parametrized spectra. Many…

Motivated by the question of how macromolecules assemble, the notion of an {\it assembly tree} of a graph is introduced. Given a graph $G$, the paper is concerned with enumerating the number of assembly trees of $G$, a problem that applies…

Comparisons of single-cell RNA sequencing (scRNA-seq) data across species can reveal links between cellular gene expression and the evolution of cell functions, features, and phenotypes. These comparisons invoke evolutionary histories, as…

We perform the asymptotic enumeration of two classes of rooted maps on orientable surfaces of genus g: m-hypermaps and m-constellations. For m=2, they correspond respectively to maps with even face degrees and bipartite maps. We obtain…

We prove that isomorphism classes of principal bundles over a diffeological space are in bijection to certain maps on its free loop space, both in a setup with and without connections on the bundles. The maps on the loop space are smooth…

We generalize the concept of ascending and descending runs from permutations to rooted labelled trees and mappings, i.e., functions from the set $\{1, \dots, n\}$ into itself. A combinatorial decomposition of the corresponding functional…

Increasing evidence suggests that chromosome folding and genetic expression are intimately connected. For example, the co-expression of a large number of genes can benefit from their spatial co-localization in the cellular space.…

The problem of bi-equivariant extension of continuous maps of binary $G$-spaces is considered. The concept of a structural map of distributive binary $G$-spaces is introduced, and a theorem on the bi-equivariant extension of structural maps…

Let $G$ be a graph such that, whenever two vertices $x$ and $y$ of $G$ are joined by three internally disjoint paths, $x$ and $y$ are adjacent. Jamison and Mulder determined that the set of such graphs coincides with the set of graphs that…

Binary relations derived from labeled rooted trees play an import role in mathematical biology as formal models of evolutionary relationships. The (symmetrized) Fitch relation formalizes xenology as the pairs of genes separated by at least…

A one-to-one correspondence is proved between the N-rooted ribbon graphs, or maps, with e edges and the (e-N+1)-loop Feynman diagrams of a certain quantum field theory. This result is used to obtain explicit expressions and relations for…

We extend the classical construction of operator colligations and characteristic functions. Consider the group $G$ of finite block unitary matrices of size $\alpha+\infty+...+\infty$ ($k$ times). Consider the subgroup $K=U(\infty)$, which…

We construct and study an extended random matrix model of RNA (polymer) folding. A perturbation which acts on all the nucleotides in the chain is added to the action of the RNA partition function. The effect of this perturbation on the…

To a given nonsingular triangular matrix A with entries from a ring, we associate a weighted bipartite graph G(A) and give a combinatorial description of the inverse of A by employing paths in G(A). Under a certain condition, nonsingular…