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Phylogenetic networks are directed acyclic graphs that depict the genomic evolution of related taxa. Reticulation nodes in such networks (nodes with more than one parent) represent reticulate evolutionary events, such as recombination,…

Populations and Evolution · Quantitative Biology 2024-11-21 Alexey Markin , Sriram Vijendran , Oliver Eulenstein

Several problems that are NP-hard on general graphs are efficiently solvable on graphs with bounded treewidth. Efforts have been made to generalize treewidth and the related notion of pathwidth to digraphs. Directed treewidth, DAG-width and…

Data Structures and Algorithms · Computer Science 2026-05-22 Shiva Kintali , Nishad Kothari , Akash Kumar

We prove the following theorem. Given a planar graph $G$ and an integer $k$, it is possible in polynomial time to randomly sample a subset $A$ of vertices of $G$ with the following properties: (i) $A$ induces a subgraph of $G$ of treewidth…

Data Structures and Algorithms · Computer Science 2016-04-21 Fedor V. Fomin , Daniel Lokshtanov , Dániel Marx , Marcin Pilipczuk , Michał Pilipczuk , Saket Saurabh

In distance query reconstruction, we wish to reconstruct the edge set of a hidden graph by asking as few distance queries as possible to an oracle. Given two vertices $u$ and $v$, the oracle returns the shortest path distance between $u$…

Data Structures and Algorithms · Computer Science 2024-10-17 Paul Bastide , Carla Groenland

The classic algorithm of Bodlaender and Kloks [J. Algorithms, 1996] solves the following problem in linear fixed-parameter time: given a tree decomposition of a graph of (possibly suboptimal) width k, compute an optimum-width tree…

Logic in Computer Science · Computer Science 2023-06-22 Mikołaj Bojańczyk , Michał Pilipczuk

Let $V$ be an $n$-dimensional vector space over a finite field $\mathbb{F}_q$, where $q$ is a prime power. Define the \emph{generalized $q$-Kneser graph} $K_q(n,k,t)$ to be the graph whose vertices are the $k$-dimensional subspaces of $V$…

Combinatorics · Mathematics 2021-01-29 Mengyu Cao , Ke Liu , Mei Lu , Zequn Lv

Linear rank-width is a linearized variation of rank-width, and it is deeply related to matroid path-width. In this paper, we show that the linear rank-width of every $n$-vertex distance-hereditary graph, equivalently a graph of rank-width…

Combinatorics · Mathematics 2015-08-24 Isolde Adler , Mamadou Moustapha Kanté , O-joung Kwon

In this work, we study methodical decomposition of an undirected, unweighted complete graph ($K_n$ of order $n$, size $m$) into minimum number of edge-disjoint trees. We find that $x$, a positive integer, is minimum and…

Discrete Mathematics · Computer Science 2024-05-30 Antika Sinha , Sanjoy Kumar Saha , Partha Basuchowdhuri

This paper presents a linear FPT algorithm to find a tree decomposition with a 2-approximation of the treewidth with a significantly smaller exponential dependence on the treewidth. The algorithm runs in time $O(\text{poly}(k) 81^k n)$,…

Data Structures and Algorithms · Computer Science 2025-07-08 Mahdi Belbasi , Martin Fürer , Medha Kumar

In this paper, we present a Branch and Bound algorithm called QuickBB for computing the treewidth of an undirected graph. This algorithm performs a search in the space of perfect elimination ordering of vertices of the graph. The algorithm…

Data Structures and Algorithms · Computer Science 2012-07-19 Vibhav Gogate , Rina Dechter

A graph $G$ contains a graph $H$ as an induced minor if $H$ can be obtained from $G$ after vertex deletions and edge contractions. We show that for every $k$-vertex planar graph $H$, every graph $G$ excluding $H$ as an induced minor and…

Combinatorics · Mathematics 2024-07-23 Édouard Bonnet , Jędrzej Hodor , Tuukka Korhonen , Tomáš Masařík

We show that, for any graph optimization problem in which the feasible solutions can be expressed by a formula in monadic second-order logic describing sets of vertices or edges and in which the goal is to minimize the sum of the weights in…

Data Structures and Algorithms · Computer Science 2017-03-09 David Eppstein , Denis Kurz

We construct tree-decompositions of graphs that distinguish all their k-blocks and tangles of order k, for any fixed integer k. We describe a family of algorithms to construct such decompositions, seeking to maximize their diversity subject…

Combinatorics · Mathematics 2014-04-25 Johannes Carmesin , Reinhard Diestel , Matthias Hamann , Fabian Hundertmark

Kriz and Thomas showed that every (finite or infinite) graph of tree-width $k \in \mathbb{N}$ admits a lean tree-decomposition of width $k$. We discuss a number of counterexamples demonstrating the limits of possible generalisations of…

Combinatorics · Mathematics 2025-07-17 Sandra Albrechtsen , Raphael W. Jacobs , Paul Knappe , Max Pitz

Tree decompositions were developed by Robertson and Seymour. Since then algorithms have been developed to solve intractable problems efficiently for graphs of bounded treewidth. In this paper we extend tree decompositions to allow cycles to…

Data Structures and Algorithms · Computer Science 2007-05-23 Melanie J. Agnew , Christopher M. Homan

Tree decompositions of graphs are of fundamental importance in structural and algorithmic graph theory. Planar decompositions generalise tree decompositions by allowing an arbitrary planar graph to index the decomposition. We prove that…

Combinatorics · Mathematics 2007-06-13 David R. Wood , Jan Arne Telle

A map graph is a graph admitting a representation in which vertices are nations on a spherical map and edges are shared curve segments or points between nations. We present an explicit fixed-parameter tractable algorithm for recognizing map…

Data Structures and Algorithms · Computer Science 2022-07-01 Patrizio Angelini , Michael A. Bekos , Giordano Da Lozzo , Martin Gronemann , Fabrizio Montecchiani , Alessandra Tappini

The bend-number b(G) of a graph G is the minimum k such that G may be represented as the edge intersection graph of a set of grid paths with at most k bends. We confirm a conjecture of Biedl and Stern showing that the maximum bend-number of…

Combinatorics · Mathematics 2011-12-16 Daniel Heldt , Kolja Knauer , Torsten Ueckerdt

For finite graphs, path-width is an interesting and useful concept, but if we extend it to infinite graphs in the most obvious way (by making the indexing path infinite), it does not work nicely. The simplest extension that works nicely is…

Combinatorics · Mathematics 2025-09-23 Tung Nguyen , Alex Scott , Paul Seymour

In Graph Minor III, Robertson and Seymour conjecture that the tree-width of a planar graph and that of its dual differ by at most one. We prove that given a hypergraph H on a surface of Euler genus k, the tree-width of H^* is at most the…

Discrete Mathematics · Computer Science 2008-12-17 Frédéric Mazoit
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