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Dealing with uncertainty in applications of machine learning to real-life data critically depends on the knowledge of intrinsic dimensionality (ID). A number of methods have been suggested for the purpose of estimating ID, but no standard…

Machine Learning · Computer Science 2023-12-07 Jonathan Bac , Evgeny M. Mirkes , Alexander N. Gorban , Ivan Tyukin , Andrei Zinovyev

The advent of modern data processing has led to an increasing tendency towards interdisciplinarity, which frequently involves the importation of different technical approaches. Consequently, there is an urgent need for a unified data…

Machine Learning · Computer Science 2024-06-04 Chen Zhang , Lecheng Jia , Wei Zhang , Ning Wen

MatchingTools is a Python library for doing symbolic calculations in effective field theory. It provides the tools to construct general models by defining their field content and their interaction Lagrangian. Once a model is given, the…

High Energy Physics - Phenomenology · Physics 2018-08-09 Juan C. Criado

GAMMA_FLOW is an open-source Python package for real-time analysis of spectral data. It supports classification, denoising, decomposition, and outlier detection of both single- and multi-component spectra. Instead of relying on large,…

Machine Learning · Computer Science 2025-11-13 Viola Rädle , Tilman Hartwig , Benjamin Oesen , Emily Alice Kröger , Julius Vogt , Eike Gericke , Martin Baron

In this article we introduce the supervised machine learning tool called Feyn. The simulation engine that powers this tool is called the QLattice. The QLattice is a supervised machine learning tool inspired by Richard Feynman's path…

Pyrit is a field simulation software based on the finite element method written in Python to solve coupled systems of partial differential equations. It is designed as a modular software that is easily modifiable and extendable. The…

Computational Engineering, Finance, and Science · Computer Science 2023-10-02 Jonas Bundschuh , M. Greta Ruppert , Yvonne Späck-Leigsnering

Numpy and SciPy are program libraries for the Python scripting language, which apply to a large spectrum of numerical and scientific computing tasks. The Sage project provides a multiplatform software environment which enables one to use,…

Numerical Analysis · Mathematics 2012-08-21 Lauri Ruotsalainen , Matti Vuorinen

SPEEDY is an Eclipse-based IDE for exploring techniques that assist users in generating correct specifications, particularly including invariant inference algorithms and tools. It integrates with several back-end tools that propose…

Logic in Computer Science · Computer Science 2014-04-29 David R. Cok , Scott C. Johnson

This paper describes the design and implementation of Stingray, a library in Python built to perform time series analysis and related tasks on astronomical light curves. Its core functionality comprises a range of Fourier analysis…

Instrumentation and Methods for Astrophysics · Physics 2019-08-12 D. Huppenkothen , M. Bachetti , A. L. Stevens , S. Migliari , P. Balm , O. Hammad , U. M. Khan , H. Mishra , H. Rashid , S. Sharma , R. V. Blanco , E. M. Ribeiro

Python type inference is challenging in practice. Due to its dynamic properties and extensive dependencies on third-party libraries without type annotations, the performance of traditional static analysis techniques is limited. Although…

Software Engineering · Computer Science 2021-06-29 Siwei Cui , Gang Zhao , Zeyu Dai , Luochao Wang , Ruihong Huang , Jeff Huang

Inference on time series data is a common requirement in many scientific disciplines and internet of things (IoT) applications, yet there are few resources available to domain scientists to easily, robustly, and repeatably build such…

Mathematical Software · Computer Science 2016-09-16 Brett Naul , Stéfan van der Walt , Arien Crellin-Quick , Joshua S. Bloom , Fernando Pérez

Electronic-structure theory is the foundation of the description of materials including multiscale modeling of their properties and functions. Obviously, without sufficient accuracy at the base, reliable predictions are unlikely at any…

Materials Science · Physics 2026-04-22 Joseph W. Abbott , Carlos Mera Acosta , Alaa Akkoush , Alberto Ambrosetti , Viktor Atalla , Alexej Bagrets , Jörg Behler , Daniel Berger , Hannah Bertschi , Björn Bieniek , Jonas Björk , Volker Blum , Saeed Bohloul , Connor L. Box , Nicholas Boyer , Danilo Simoes Brambila , Gabriel A. Bramley , Kyle R. Bryenton , María Camarasa-Gómez , Christian Carbogno , Fabio Caruso , Sucismita Chutia , Michele Ceriotti , Gábor Csányi , William Dawson , Francisco A. Delesma , Fabio Della Sala , Bernard Delley , Robert A. DiStasio , Maria Dragoumi , Sander Driessen , Marc Dvorak , Simon Erker , Ferdinand Evers , Eduardo Fabiano , Matthew R. Farrow , Florian Fiebig , Jakob Filser , Lucas Foppa , Lukas Gallandi , Alberto Garcia , Ralf Gehrke , Simiam Ghan , Luca M. Ghiringhelli , Mark Glass , Stefan Goedecker , Dorothea Golze , Matthias Gramzow , James A. Green , Andrea Grisafi , Andreas Grüneis , Jan Günzl , Stefan Gutzeit , Samuel J. Hall , Felix Hanke , Ville Havu , Xingtao He , Joscha Hekele , Olle Hellman , Uthpala Herath , Jan Hermann , Daniel Hernangómez-Pérez , Oliver T. Hofmann , Johannes Hoja , Simon Hollweger , Lukas Hörmann , Ben Hourahine , Wei Bin How , William P. Huhn , Marcel Hülsberg , Timo Jacob , Sara Panahian Jand , Hong Jiang , Erin R. Johnson , Werner Jürgens , J. Matthias Kahk , Yosuke Kanai , Kisung Kang , Petr Karpov , Elisabeth Keller , Roman Kempt , Danish Khan , Matthias Kick , Benedikt P. Klein , Jan Kloppenburg , Alexander Knoll , Florian Knoop , Franz Knuth , Simone S. Köcher , Jannis Kockläuner , Sebastian Kokott , Thomas Körzdörfer , Hagen-Henrik Kowalski , Peter Kratzer , Pavel Kůs , Raul Laasner , Bruno Lang , Björn Lange , Marcel F. Langer , Ask Hjorth Larsen , Hermann Lederer , Susi Lehtola , Maja-Olivia Lenz-Himmer , Moritz Leucke , Sergey Levchenko , Alan Lewis , O. Anatole von Lilienfeld , Konstantin Lion , Werner Lipsunen , Johannes Lischner , Yair Litman , Chi Liu , Qing-Long Liu , Songrui Liu , Andrew J. Logsdail , Michael Lorke , Zekun Lou , Iuliia Mandzhieva , Andreas Marek , Johannes T. Margraf , Reinhard J. Maurer , Tobias Melson , Florian Merz , Jörg Meyer , Georg S. Michelitsch , Teruyasu Mizoguchi , Evgeny Moerman , Dylan Morgan , Jack Morgenstein , Jonathan Moussa , Akhil S. Nair , Lydia Nemec , Harald Oberhofer , Alberto Otero-de-la-Roza , Ramón L. Panadés-Barrueta , Thanush Patlolla , Mariia Pogodaeva , Alexander Pöppl , Alastair J. A. Price , Thomas A. R. Purcell , Jingkai Quan , Nathaniel Raimbault , Markus Rampp , Karsten Rasim , Ronald Redmer , Xinguo Ren , Karsten Reuter , Norina A. Richter , Stefan Ringe , Patrick Rinke , Simon P. Rittmeyer , Herzain I. Rivera-Arrieta , Matti Ropo , Mariana Rossi , Victor Ruiz , Nikita Rybin , Andrea Sanfilippo , Matthias Scheffler , Christoph Scheurer , Christoph Schober , Franziska Schubert , Tonghao Shen , Christopher Shepard , Honghui Shang , Kiyou Shibata , Andrei Sobolev , Ruyi Song , Aloysius Soon , Daniel T. Speckhard , Pavel V. Stishenko , Elia Stocco , Muhammad N. Tahir , Izumi Takahara , Jun Tang , Zechen Tang , Thomas Theis , Franziska Theiss , Alexandre Tkatchenko , Milica Todorović , George Trenins , Oliver T. Unke , Álvaro Vázquez-Mayagoitia , Oscar van Vuren , Daniel Waldschmidt , Han Wang , Yanyong Wang , Jürgen Wieferink , Jan Wilhelm , Scott Woodley , Jianhang Xu , Yong Xu , Yi Yao , Yingyu Yao , Mina Yoon , Victor Wen-zhe Yu , Zhenkun Yuan , Marios Zacharias , Igor Ying Zhang , Min-Ye Zhang , Wentao Zhang , Xingchen Zhang , Rundong Zhao , Shuo Zhao , Ruiyi Zhou , Yuanyuan Zhou , Tong Zhu

Integrated Information Theory (IIT) is an audacious attempt to pin down the abstract, phenomenological experiences of consciousness into a rigorous, mathematical framework. We show that IIT's stance in regards to neuronal noise is…

Neurons and Cognition · Quantitative Biology 2021-12-10 Refath Bari

This paper presents `chipfiring`, a comprehensive Python package for the mathematical analysis of chip-firing games on finite graphs. The package provides a robust toolkit for defining graphs and chip configurations (divisors), performing…

Combinatorics · Mathematics 2025-08-05 Dhyey Dharmendrakumar Mavani , Tairan Ji , Nathan Pflueger

We introduce FDApy, an open-source Python package for the analysis of functional data. The package provides tools for the representation of (multivariate) functional data defined on different dimensional domains and for functional data that…

Mathematical Software · Computer Science 2025-03-10 Steven Golovkine

For numerical design, the development of efficient and accurate surrogate models is paramount. They allow us to approximate complex physical phenomena, thereby reducing the computational burden of direct numerical simulations. We propose…

Machine Learning · Computer Science 2023-07-26 Louis Serrano , Leon Migus , Yuan Yin , Jocelyn Ahmed Mazari , Patrick Gallinari

Real-world data with underlying structure, such as pictures of faces, are hypothesized to lie on a low-dimensional manifold. This manifold hypothesis has motivated state-of-the-art generative algorithms that learn low-dimensional data…

Machine Learning · Statistics 2022-04-28 Edmond Cunningham , Renos Zabounidis , Abhinav Agrawal , Madalina Fiterau , Daniel Sheldon

The R package innsight offers a general toolbox for revealing variable-wise interpretations of deep neural networks' predictions with so-called feature attribution methods. Aside from the unified and user-friendly framework, the package…

Machine Learning · Statistics 2025-01-22 Niklas Koenen , Marvin N. Wright

Active inference is an account of cognition and behavior in complex systems which brings together action, perception, and learning under the theoretical mantle of Bayesian inference. Active inference has seen growing applications in…

Artificial Intelligence · Computer Science 2022-05-06 Conor Heins , Beren Millidge , Daphne Demekas , Brennan Klein , Karl Friston , Iain Couzin , Alexander Tschantz

Nowadays the analysis of dynamics of and on networks represents a hot topic in the Social Network Analysis playground. To support students, teachers, developers and researchers in this work we introduce a novel framework, namely NDlib, an…

Social and Information Networks · Computer Science 2018-01-19 Giulio Rossetti , Letizia Milli , Salvatore Rinzivillo , Alina Sirbu , Fosca Giannotti , Dino Pedreschi
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