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This paper introduces \texttt{infotheory}: a package written in C++ and usable from Python and C++, for multivariate information theoretic analyses of discrete and continuous data. This package allows the user to study the relationship…

Information Theory · Computer Science 2021-06-11 Madhavun Candadai , Eduardo J. Izquierdo

In recent years, there has been increasing interest in network diffusion models and related problems. The most popular of these are the independent cascade and linear threshold models. Much of the recent experimental work done on these…

Social and Information Networks · Computer Science 2024-04-29 Eliot W. Robson , Dhemath Reddy , Abhishek K. Umrawal

Time series models are ubiquitous in science, arising in any situation where researchers seek to understand how a system's behaviour changes over time. A key problem in time series modelling is \emph{inference}; determining properties of…

Mathematical Software · Computer Science 2020-01-13 Michael Clerx , Martin Robinson , Ben Lambert , Chon Lok Lei , Sanmitra Ghosh , Gary R. Mirams , David J. Gavaghan

We present FiFTy, a modern file type identification tool for memory forensics and data carving. In contrast to previous approaches based on hand-crafted features, we design a compact neural network architecture, which uses a trainable…

Cryptography and Security · Computer Science 2020-06-09 Govind Mittal , Pawel Korus , Nasir Memon

We introduce Diddy, a collection of Python scripts for analyzing infinite discrete dynamical systems. The main focus is on generalized multidimensional shifts of finite type (SFTs). We show how Diddy can be used to easily define SFTs and…

Mathematical Software · Computer Science 2023-05-03 Ville Salo , Ilkka Törmä

PaPy, which stands for parallel pipelines in Python, is a highly flexible framework that enables the construction of robust, scalable workflows for either generating or processing voluminous datasets. A workflow is created from user-written…

Programming Languages · Computer Science 2014-07-17 Marcin Cieslik , Cameron Mura

We introduce GraSPy, a Python library devoted to statistical inference, machine learning, and visualization of random graphs and graph populations. This package provides flexible and easy-to-use algorithms for analyzing and understanding…

Social and Information Networks · Computer Science 2019-10-25 Jaewon Chung , Benjamin D. Pedigo , Eric W. Bridgeford , Bijan K. Varjavand , Hayden S. Helm , Joshua T. Vogelstein

Bayesian Networks (BNs) are used in various fields for modeling, prediction, and decision making. pgmpy is a python package that provides a collection of algorithms and tools to work with BNs and related models. It implements algorithms for…

Machine Learning · Computer Science 2023-04-19 Ankur Ankan , Johannes Textor

Partial differential equations describing the dynamics of physical systems rarely have closed-form solutions. Fourier spectral methods, which use Fast Fourier Transforms (FFTs) to approximate solutions, are a common approach to solving…

We present nerblackbox, a python library to facilitate the use of state-of-the-art transformer-based models for named entity recognition. It provides simple-to-use yet powerful methods to access data and models from a wide range of sources,…

Computation and Language · Computer Science 2023-12-08 Felix Stollenwerk

In the Python world, NumPy arrays are the standard representation for numerical data. Here, we show how these arrays enable efficient implementation of numerical computations in a high-level language. Overall, three techniques are applied…

Mathematical Software · Computer Science 2011-03-14 Stefan Van Der Walt , S. Chris Colbert , Gaël Varoquaux

Instance Space Analysis is a methodology to evaluate algorithm performance across diverse problem fields. Through visualisation and exploratory data analysis techniques, Instance Space Analysis offers objective, data-driven insights into…

This work is a rigorous development of a complete and general-purpose deep learning framework from the ground up. The fundamental components of deep learning - automatic differentiation and gradient methods of optimizing multivariable…

Mathematical Software · Computer Science 2020-11-18 Andrei Nicolae

Misconceptions about program execution hinder many novice programmers. We introduce SimpliPy, a notional machine designed around a carefully chosen Python subset to clarify core control flow and scoping concepts. Its foundation is a precise…

Programming Languages · Computer Science 2025-10-21 Moida Praneeth Jain , Venkatesh Choppella

Algorithmic fairness has received considerable attention due to the failures of various predictive AI systems that have been found to be unfairly biased against subgroups of the population. Many approaches have been proposed to mitigate…

Machine Learning · Computer Science 2025-03-14 Agathe Fernandes Machado , Suzie Grondin , Philipp Ratz , Arthur Charpentier , François Hu

In this paper, we present nmtpy, a flexible Python toolkit based on Theano for training Neural Machine Translation and other neural sequence-to-sequence architectures. nmtpy decouples the specification of a network from the training and…

Computation and Language · Computer Science 2018-11-20 Ozan Caglayan , Mercedes García-Martínez , Adrien Bardet , Walid Aransa , Fethi Bougares , Loïc Barrault

SciPy is an open source scientific computing library for the Python programming language. SciPy 1.0 was released in late 2017, about 16 years after the original version 0.1 release. SciPy has become a de facto standard for leveraging…

Dynamically typed languages such as Python have become very popular. Among other strengths, Python's dynamic nature and its straightforward linking to native code have made it the de-facto language for many research areas such as Artificial…

Programming Languages · Computer Science 2023-01-13 Wenting Zhao , Ibrahim Abdelaziz , Julian Dolby , Kavitha Srinivas , Mossad Helali , Essam Mansour

Scientific inference is often undermined by the vast but rarely explored "multiverse" of defensible modelling choices, which can generate results as variable as the phenomena under study. We introduce RobustiPy, an open-source Python…

Methodology · Statistics 2026-05-20 Daniel Valdenegro , Jiani Yan , Duiyi Dai , Charles Rahal

We introduce and make publicly available the NIFTY Financial News Headlines dataset, designed to facilitate and advance research in financial market forecasting using large language models (LLMs). This dataset comprises two distinct…

Computational Finance · Quantitative Finance 2024-05-17 Raeid Saqur , Ken Kato , Nicholas Vinden , Frank Rudzicz