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Contemporary neuroscience has embraced network science to study the complex and self-organized structure of the human brain; one of the main outstanding issues is that of inferring from measure data, chiefly functional Magnetic Resonance…

Optimization and Control · Mathematics 2017-03-31 Giulia Prando , Mattia Zorzi , Alessandra Bertoldo , Alessandro Chiuso

Brain connectomics is still largely dominated by pairwise-based models, such as graphs, which cannot represent circulatory or higher-order functional interactions. In this paper, we propose a multimodal framework based on Topological Signal…

Neurons and Cognition · Quantitative Biology 2026-04-01 Breno C. Bispo , Stefania Sardellitti , Juliano B. Lima , Fernando A. N. Santos

Many computer vision applications involve modeling complex spatio-temporal patterns in high-dimensional motion data. Recently, restricted Boltzmann machines (RBMs) have been widely used to capture and represent spatial patterns in a single…

Computer Vision and Pattern Recognition · Computer Science 2017-10-24 Siqi Nie , Ziheng Wang , Qiang Ji

Our goal in this paper is to leverage the potential of the topological signal processing (TSP) framework for analyzing brain networks. Representing brain data as signals over simplicial complexes allows us to capture higher-order…

Signal Processing · Electrical Eng. & Systems 2025-04-11 Breno C. Bispo , Stefania Sardellitti , Fernando A. N. Santos , Juliano B. Lima

A pressing scientific challenge is to understand how brains work. Of particular interest is the neocortex,the part of the brain that is especially large in humans, capable of handling a wide variety of tasks including visual, auditory,…

Neural and Evolutionary Computing · Computer Science 2016-09-03 Peter U. Diehl , Matthew Cook

During wakefulness and deep sleep brain states, cortical neural networks show a different behavior, with the second characterized by transients of high network activity. To investigate their impact on neuronal behavior, we apply a pairwise…

Neurons and Cognition · Quantitative Biology 2017-10-30 Trang-Anh Nghiem , Olivier Marre , Alain Destexhe , Ulisse Ferrari

Maximum Entropy models can be inferred from large data-sets to uncover how collective dynamics emerge from local interactions. Here, such models are employed to investigate neurons recorded by multielectrode arrays in the human and monkey…

Neurons and Cognition · Quantitative Biology 2018-07-11 Trang-Anh Nghiem , Bartosz Telenczuk , Olivier Marre , Alain Destexhe , Ulisse Ferrari

A Restricted Boltzmann Machine (RBM) is an unsupervised machine-learning bipartite graphical model that jointly learns a probability distribution over data and extracts their relevant statistical features. As such, RBM were recently…

Machine Learning · Computer Science 2019-02-19 Jérôme Tubiana , Simona Cocco , Rémi Monasson

The analysis of complex networks has revealed patterns of organization in a variety of natural and artificial systems, including neuronal networks of the brain at multiple scales. In this paper, we describe a novel analysis of the…

Neurons and Cognition · Quantitative Biology 2015-06-26 Luciano da F. Costa , Olaf Sporns

Networks are a fundamental model of complex systems throughout the sciences, and network datasets are typically analyzed through lower-order connectivity patterns described at the level of individual nodes and edges. However, higher-order…

Social and Information Networks · Computer Science 2018-02-21 Austin R. Benson

We propose a data-driven approach using a Restricted Boltzmann Machine (RBM) to solve the Schr\"odinger equation in configuration space. Traditional Configuration Interaction (CI) methods construct the wavefunction as a linear combination…

Last years have seen a regain of interest for the use of stochastic block modeling (SBM) in recommender systems. These models are seen as a flexible alternative to tensor decomposition techniques that are able to handle labeled data. Recent…

Machine Learning · Computer Science 2022-09-19 Gaël Poux-Médard , Julien Velcin , Sabine Loudcher

We propose a Restricted Boltzmann Machine (RBM) neural network using a quantum thermodynamics formalism and the maximization of entropy as the cost function for the optimization problem. We verify the possibility of using an entropy…

Disordered Systems and Neural Networks · Physics 2021-03-18 Roshawn Terrell , Eleanor Watson , Timofey Golubev

The restricted Boltzmann machine (RBM) is a neural network based on the Ising model, well known for its ability to learn probability distributions and stochastically generate new content. However, the high computational cost of Gibbs…

Optics · Physics 2026-03-13 Li Luo , Yisheng Fang , Wanyi Zhang , Zhichao Ruan

We study the type of distributions that Restricted Boltzmann Machines (RBMs) with different activation functions can express by investigating the effect of the activation function of the hidden nodes on the marginal distribution they impose…

Machine Learning · Statistics 2021-03-31 Nicola Bulso , Yasser Roudi

The inverse Ising model is used in computational neuroscience to infer probability distributions of the synchronous activity of large neuronal populations. This method allows for finding the Boltzmann distribution with single neuron biases…

Neurons and Cognition · Quantitative Biology 2022-07-27 Geoffroy Delamare , Ulisse Ferrari

The spatial photonic Ising machine (SPIM) [D. Pierangeli et al., Phys. Rev. Lett. 122, 213902 (2019)] is a promising optical architecture utilizing spatial light modulation for solving large-scale combinatorial optimization problems…

Disordered Systems and Neural Networks · Physics 2023-08-09 Hiroshi Yamashita , Ken-ichi Okubo , Suguru Shimomura , Yusuke Ogura , Jun Tanida , Hideyuki Suzuki

We investigate the influence of indirect connections, interregional distance and collective effects on the large-scale functional networks of the human cortex. We study topologies of empirically derived resting state networks (RSNs),…

Neurons and Cognition · Quantitative Biology 2013-02-18 Vesna Vuksanović , Philipp Hövel

One of the most well-established tools for modeling the brain as a complex system is the functional connectivity network, which examines the correlations between pairs of interacting brain regions. While powerful, the network model is…

Information Theory · Computer Science 2022-06-15 Thomas F. Varley , Maria Pope , Joshua Faskowitz , Olaf Sporns

Classification of sequence data is the topic of interest for dynamic Bayesian models and Recurrent Neural Networks (RNNs). While the former can explicitly model the temporal dependencies between class variables, the latter have a capability…

Machine Learning · Computer Science 2018-03-12 Son N. Tran , Srikanth Cherla , Artur Garcez , Tillman Weyde