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Identifying early warning signs of sudden population changes and mechanisms leading to regime shifts are highly desirable in population biology. In this paper, a two-trophic ecosystem comprising of two species of predators, competing for…

Populations and Evolution · Quantitative Biology 2022-09-23 Susmita Sadhu

We consider dense wireless random-access networks, modeled as systems of particles with hard-core interaction. The particles represent the network users that try to become active after an exponential back-off time, and stay active for an…

Probability · Mathematics 2014-03-14 Alessandro Zocca , Sem C. Borst , Johan S. H. van Leeuwaarden

This work is devoted to the study of the decay of multiscale deterministic solutions of the unforced Burgers' equation in the limit of vanishing viscosity. A deterministic model of turbulence-like evolution is considered. We con- struct the…

Fluid Dynamics · Physics 2009-11-06 S. N. Gurbatov , A. V. Troussov

Different types of interactions coexist and coevolve to shape the structure and function of a multiplex network. We propose here a general class of growth models in which the various layers of a multiplex network coevolve through a set of…

Physics and Society · Physics 2014-10-15 Vincenzo Nicosia , Ginestra Bianconi , Vito Latora , Marc Barthelemy

Nutrient gradients and limitations play a pivotal role in the life of all microbes, both in their natural habitat as well as in artificial, microfluidic systems. Spatial concentration gradients of nutrients in densely packed cell…

The Bianconi-Barabasi model of a growing network is revisited. This model, defined by a preferential attachment rule involving both the degrees of the nodes and their intrinsic fitnesses, has the fundamental property to undergo a phase…

Statistical Mechanics · Physics 2015-03-17 C. Godreche , J. M. Luck

Global, population-wide oscillations in models of cyclic dominance may result in the collapse of biodiversity due to the accidental extinction of one species in the loop. Previous research has shown that such oscillations can emerge if the…

Populations and Evolution · Quantitative Biology 2016-12-14 Attila Szolnoki , Matjaz Perc

Understanding the structure of real data is paramount in advancing modern deep-learning methodologies. Natural data such as images are believed to be composed of features organized in a hierarchical and combinatorial manner, which neural…

Machine Learning · Statistics 2024-12-25 Antonio Sclocchi , Alessandro Favero , Matthieu Wyart

We investigate the chemical dissolution of porous media using a network model in which the system is represented as a series of interconnected pipes with the diameter of each segment increasing in proportion to the local reactant…

Fluid Dynamics · Physics 2015-06-12 Agnieszka Budek , Piotr Szymczak

Evolution of a system of diffusing and proliferating mortal reactants is analyzed in the presence of randomly moving catalysts. While the continuum description of the problem predicts reactant extinction as the average growth rate becomes…

Soft Condensed Matter · Physics 2009-10-31 N. M. Shnerb , E. Bettelheim , Y. Louzoun , O. Agam , S. Solomon

We analyze the properties of model food webs and of fifteen community food webs from a variety of environments. We first perform a theoretical analysis of the niche model of Williams and Martinez. We derive analytical expressions for the…

Populations and Evolution · Quantitative Biology 2007-05-23 J. Camacho , R. Guimera , D. B. Stouffer , L. A. N. Amaral

We investigate the tumor boundary instability induced by nutrient consumption and supply based on a Hele-Shaw model derived from taking the incompressible limit of a cell density model. We analyze the boundary stability/instability in two…

Analysis of PDEs · Mathematics 2023-05-17 Yu Feng , Min Tang , Xiaoqian Xu , Zhennan Zhou

We consider a dynamic network in continuum time and space in which nodes, with initial locations given by a Poisson point process, move according to i.i.d. isotropic $\alpha$-stable processes. Each node is additionally equipped with an…

Probability · Mathematics 2026-02-26 Peter Gracar , Benedikt Jahnel , Lukas Lüchtrath , Anh Duc Vu

We identify and formalize a fundamental gradient descent phenomenon resulting in a learning proclivity in over-parameterized neural networks. Gradient Starvation arises when cross-entropy loss is minimized by capturing only a subset of…

Machine Learning · Computer Science 2021-11-25 Mohammad Pezeshki , Sékou-Oumar Kaba , Yoshua Bengio , Aaron Courville , Doina Precup , Guillaume Lajoie

We examine a lattice model of tumor growth where survival of tumor cells depends on the supplied nutrients. When such a supply is random, the extinction of tumors belongs to the directed percolation universality class. However, when the…

Statistical Mechanics · Physics 2015-05-30 Antonio Luis Ferreira , Dorota Lipowska , Adam Lipowski

We study the extinction of long-lived epidemics on finite complex networks induced by intrinsic noise. Applying analytical techniques to the stochastic Susceptible-Infected-Susceptible model, we predict the distribution of large…

Physics and Society · Physics 2017-05-31 Jason Hindes , Ira B. Schwartz

Highly-diverse ecosystems exhibit a broad distribution of population sizes and species turnover, where species at high and low abundances are exchanged over time. We show that these two features generically emerge in the fluctuating phase…

Populations and Evolution · Quantitative Biology 2024-01-09 Thibaut Arnoulx de Pirey , Guy Bunin

In food webs, many interacting species coexist despite the restrictions imposed by the competitive exclusion principle and apparent competition. For the generalized Lotka-Volterra equations, sustainable coexistence necessitates nonzero…

Populations and Evolution · Quantitative Biology 2015-06-18 Jan O. Haerter , Namiko Mitarai , Kim Sneppen

We found that models of evolving random networks exhibit dynamic scaling similar to scaling of growing surfaces. It is demonstrated by numerical simulations of two variants of the model in which nodes are added as well as removed [Phys.…

Statistical Mechanics · Physics 2009-11-07 Miroslav Kotrla , Frantisek Slanina , Jakub Steiner

The reward system is one of the fundamental drivers of animal behaviors and is critical for survival and reproduction. Despite its importance, the problem of how the reward system has evolved is underexplored. In this paper, we try to…

Neural and Evolutionary Computing · Computer Science 2024-06-24 Yuji Kanagawa , Kenji Doya