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This article introduces the physics of information in the context of molecular biology and genomics. Entropy and information, the two central concepts of Shannon's theory of information and communication, are often confused with each other…

Biomolecules · Quantitative Biology 2007-05-23 Christoph Adami

The concept of entropy connects the number of possible configurations with the number of variables in large stochastic systems. Independent or weakly interacting variables render the number of configurations scale exponentially with the…

Statistical Mechanics · Physics 2020-06-25 Sámuel G. Balogh , Gergely Palla , Péter Pollner , Dániel Czégel

We propose a new perspective on Turbulence using Information Theory. We compute the entropy rate of a turbulent velocity signal and we particularly focus on its dependence on the scale. We first report how the entropy rate is able to…

Statistical Mechanics · Physics 2016-11-03 Carlos Granero-Belinchon , Stephane G. Roux , Nicolas B. Garnier

Understanding the way in which random entities interact is of key interest in numerous scientific fields. This can range from a full characterization of the joint distribution to single scalar summary statistics. In this work we identify a…

Statistics Theory · Mathematics 2016-11-22 Yaniv Tenzer , Gal Elidan

Epistasis is a key concept in the theory of adaptation. Indicators of epistasis are of interest for large system where systematic fitness measurements may not be possible. Some recent approaches depend on information theory. We show that…

Populations and Evolution · Quantitative Biology 2015-03-04 Kristina Crona

An entropy function is proposed in [Phys. Rev. Lett. 131, 251602] as a way to detect criticality even when the system size is small. In this note we apply this strategy in the search for criticality of lattice transfer matrices constructed…

Strongly Correlated Electrons · Physics 2026-05-06 Anran Jin , Ling-Yan Hung

Mutual information is commonly used as a measure of similarity between competing labelings of a given set of objects, for example to quantify performance in classification and community detection tasks. As argued recently, however, the…

Social and Information Networks · Computer Science 2025-07-17 Maximilian Jerdee , Alec Kirkley , M. E. J. Newman

We study the time evolution of the mutual information between the mass distributions in spatially separated but casually connected regions in an expanding universe. The evolution of the mutual information is primarily determined by the…

Cosmology and Nongalactic Astrophysics · Physics 2023-07-25 Biswajit Pandey

We propose a formal expansion of the transfer entropy to put in evidence irreducible sets of variables which provide information for the future state of each assigned target. Multiplets characterized by a large contribution to the expansion…

Quantitative Methods · Quantitative Biology 2015-06-04 S. Stramaglia , Guo-Rong Wu , M. Pellicoro , D. Marinazzo

We introduce a new information-theoretic formulation of quantum measurement uncertainty relations, based on the notion of relative entropy between measurement probabilities. In the case of a finite-dimensional system and for any approximate…

Mathematical Physics · Physics 2018-03-02 Alberto Barchielli , Matteo Gregoratti , Alessandro Toigo

Characterizing the entropy of a system is a crucial, and often computationally costly, step in understanding its thermodynamics. It plays a key role in the study of phase transitions, pattern formation, protein folding and more. Current…

Statistical Mechanics · Physics 2020-12-02 Amit Nir , Eran Sela , Roy Beck , Yohai Bar-Sinai

Mutual information is widely applied to learn latent representations of observations, whilst its implication in classification neural networks remain to be better explained. We show that optimising the parameters of classification neural…

Machine Learning · Computer Science 2020-09-18 Zhenyue Qin , Dongwoo Kim , Tom Gedeon

We develop an information-theoretic view of the stochastic block model, a popular statistical model for the large-scale structure of complex networks. A graph $G$ from such a model is generated by first assigning vertex labels at random…

Information Theory · Computer Science 2015-08-03 Yash Deshpande , Emmanuel Abbe , Andrea Montanari

We investigate the concept of entropy in probabilistic theories more general than quantum mechanics, with particular reference to the notion of information causality recently proposed by Pawlowski et. al. (arXiv:0905.2992). We consider two…

Information shared between parties quantifies their correlation. The encoding of correlations across space and time characterises the structure, history, and interactions of systems. One of the most fundamental properties that emerges from…

Entropy is a quantity for counting physical degrees of freedom in a system. At a finite temperature, one can use thermal entropy to study thermodynamical properties. At zero temperature, entanglement entropy is expected to provide a…

High Energy Physics - Theory · Physics 2018-10-29 Chen-Te Ma

Analysis of a probabilistic system often requires to learn the joint probability distribution of its random variables. The computation of the exact distribution is usually an exhaustive precise analysis on all executions of the system. To…

Information Theory · Computer Science 2023-07-19 Fabrizio Biondi , Yusuke Kawamoto , Axel Legay , Louis-Marie Traonouez

One of the fundamental steps toward understanding a complex system is identifying variation at the scale of the system's components that is most relevant to behavior on a macroscopic scale. Mutual information provides a natural means of…

Machine Learning · Computer Science 2024-03-20 Kieran A. Murphy , Dani S. Bassett

The use of coarse graining to connect physical and information theoretic entropies has recently been given a precise formulation in terms of ``observational entropy'', describing entropy for observers with respect to a measurement. Here we…

Quantum Physics · Physics 2025-10-14 Leonardo Rossetti , Stefano Mancini , Andreas Winter , Joseph Schindler

In statistical physics, useful notions of entropy are defined with respect to some coarse graining procedure over a microscopic model. Here we consider some special problems that arise when the microscopic model is taken to be relativistic…

High Energy Physics - Theory · Physics 2009-10-28 C. Holzhey , F. Larsen , F. Wilczek
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