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Biochemical reactions can happen on different time scales and also the abundance of species in these reactions can be very different from each other. Classical approaches, such as deterministic or stochastic approach, fail to account for or…

Quantitative Methods · Quantitative Biology 2014-09-16 Arnab Ganguly , Derya Altintan , Heinz Koeppl

Biochemical reaction networks are often modelled using discrete-state, continuous-time Markov chains. System statistics of these Markov chains usually cannot be calculated analytically and therefore estimates must be generated via…

Quantitative Methods · Quantitative Biology 2016-04-19 Daniel Wilson , Ruth E. Baker

Stochastic simulation methods can be applied successfully to model exact spatio-temporally resolved reaction-diffusion systems. However, in many cases, these methods can quickly become extremely computationally intensive with increasing…

Quantitative Methods · Quantitative Biology 2016-04-29 Jonathan U. Harrison , Christian A. Yates

Hierarchical matrices approximate a given matrix by a decomposition into low-rank submatrices that can be handled efficiently in factorized form. $\mathcal{H}^2$-matrices refine this representation following the ideas of fast multipole…

Numerical Analysis · Mathematics 2024-04-24 Steffen Börm

We propose Hier-SLAM, a semantic 3D Gaussian Splatting SLAM method featuring a novel hierarchical categorical representation, which enables accurate global 3D semantic mapping, scaling-up capability, and explicit semantic label prediction…

Robotics · Computer Science 2025-03-11 Boying Li , Zhixi Cai , Yuan-Fang Li , Ian Reid , Hamid Rezatofighi

Hierarchical decomposition of control is unavoidable in large dynamical systems. In reinforcement learning (RL), it is usually solved with subgoals defined at higher policy levels and achieved at lower policy levels. Reaching these goals…

Human activities are particularly complex and variable, and this makes challenging for deep learning models to reason about them. However, we note that such variability does have an underlying structure, composed of a hierarchy of patterns…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Simone Alberto Peirone , Francesca Pistilli , Giuseppe Averta

One of the biggest challenges to modern deep reinforcement learning (DRL) algorithms is sample efficiency. Many approaches learn a world model in order to train an agent entirely in imagination, eliminating the need for direct environment…

Artificial Intelligence · Computer Science 2024-02-20 Paul Mattes , Rainer Schlosser , Ralf Herbrich

Exploiting stochastic path integral theory, we obtain \emph{by simulation} substantial gains in efficiency for the computation of reaction rates in one-dimensional, bistable, overdamped stochastic systems. Using a well-defined measure of…

Computational Physics · Physics 2016-09-08 Daniel M. Zuckerman , Thomas B. Woolf

Two common approaches to sequential decision-making are AI planning (AIP) and reinforcement learning (RL). Each has strengths and weaknesses. AIP is interpretable, easy to integrate with symbolic knowledge, and often efficient, but requires…

Artificial Intelligence · Computer Science 2022-09-30 Junkyu Lee , Michael Katz , Don Joven Agravante , Miao Liu , Geraud Nangue Tasse , Tim Klinger , Shirin Sohrabi

Dynamic models have been successfully used in producing estimates of HIV epidemics at national level, due to their epidemiological nature and their ability to simultaneously estimate prevalence, incidence, and mortality rates. Recently, HIV…

Methodology · Statistics 2016-02-19 Le Bao , Ben Sheng , Xiaoyue Niu , Yuan Tang , Tim Brown , Peter D. Ghys , Jeff W. Eaton

Molecular dynamics (MD) simulations are useful in obtaining thermodynamic and kinetic properties of bio-molecules but are limited by the timescale barrier, i.e., we may be unable to efficiently obtain properties because we need to run…

Chemical Physics · Physics 2017-08-23 Surl-Hee Ahn , Jay W. Grate , Eric F. Darve

Sequence models in reinforcement learning require task knowledge to estimate the task policy. This paper presents a hierarchical algorithm for learning a sequence model from demonstrations. The high-level mechanism guides the low-level…

Machine Learning · Computer Science 2022-09-22 André Correia , Luís A. Alexandre

Neutral atom quantum computing's great scaling potential has resulted in it emerging as a popular modality in recent years. For state preparation, atoms are loaded stochastically and have to be detected and rearranged at runtime to create a…

Emerging Technologies · Computer Science 2025-09-16 Jonas Winklmann , Martin Schulz

Conventional AI-driven AMS design automation algorithms remain constrained by their reliance on high-quality datasets to capture underlying circuit behavior, coupled with poor transferability across architectures, and a lack of adaptive…

Artificial Intelligence · Computer Science 2026-03-30 Souradip Poddar , Chia-Tung Ho , Ziming Wei , Weidong Cao , Haoxing Ren , David Z. Pan

Motion generation in cluttered, dense, and dynamic environments is a central topic in robotics, rendered as a multi-objective decision-making problem. Current approaches trade-off between safety and performance. On the one hand, reactive…

Robotics · Computer Science 2024-07-30 Kay Hansel , Julen Urain , Jan Peters , Georgia Chalvatzaki

Recent advances in hierarchical policy learning highlight the advantages of decomposing systems into high-level and low-level agents, enabling efficient long-horizon reasoning and precise fine-grained control. However, the interface between…

Robotics · Computer Science 2025-02-24 Haibo Zhao , Dian Wang , Yizhe Zhu , Xupeng Zhu , Owen Howell , Linfeng Zhao , Yaoyao Qian , Robin Walters , Robert Platt

The question of fast convergence in the classical problem of high dimensional linear regression has been extensively studied. Arguably, one of the fastest procedures in practice is Iterative Hard Thresholding (IHT). Still, IHT relies…

Statistics Theory · Mathematics 2020-08-28 Mohamed Ndaoud

This paper presents a hierarchical segment-based optimization method for Simultaneous Localization and Mapping (SLAM) system. First we propose a reliable trajectory segmentation method that can be used to increase efficiency in the back-end…

Robotics · Computer Science 2021-11-09 Yuxin Tian , Yujie Wang , Ming Ouyang , Xuesong Shi

Increasing complexity of scientific simulations and HPC architectures are driving the need for adaptive workflows, where the composition and execution of computational and data manipulation steps dynamically depend on the evolutionary state…

Computational Engineering, Finance, and Science · Computer Science 2015-06-30 Janine C. Bennett , Ankit Bhagatwala , Jacqueline H. Chen , C. Seshadhri , Ali Pinar , Maher Salloum